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Report for CCDS24380.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24380.1 Public Mus musculus 11 Sf3a1 23 108 98 CCDS HistoryNCBI Gene:67465Re-query CCDS DB by CCDS ID:24380.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24380.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002198.3 ENSMUSP00000002198.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002198.3Link to Ensembl Protein Viewer:ENSMUSP00000002198.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000002198Re-query CCDS DB by Protein ID:ENSMUSP00000002198
Original member Current member NCBI NM_026175.5 NP_080451.4 Accepted alive Link to Nucleotide Sequence:NM_026175.5Link to Protein Sequence:NP_080451.4Re-query CCDS DB by Nucleotide ID:NM_026175Re-query CCDS DB by Protein ID:NP_080451Link to BLAST:NP_080451.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080451.4 791 Q8K4Z5 791 100% 0 0

Chromosomal Locations for CCDS 24380.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 4160488 4160550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4161046 4161167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4166496 4166703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4167633 4167890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4171062 4171136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4173080 4173230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4174032 4174219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4175036 4175153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4175395 4175580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4176270 4176391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4176481 4176726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4177413 4177620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4178071 4178225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4179141 4179242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4179354 4179425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4180034 4180135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2376 nt):
ATGCAGGCCGGACCCGTGCAGGCGGTACCCCCGCCGCCGCCAGTAGCCACTGAGTCCAAACAGCCAATTG
AAGAAGAAGCATCGTCAAAGGAGGATCCCACCCCTTCCAAGCCAGTGGTCGGCATTATTTACCCTCCCCC
GGAGGTCAGGAACATCGTCGACAAGACTGCCAGTTTTGTGGCCAGAAATGGGCCTGAATTTGAAGCTAGG
ATTCGACAGAATGAGATCAACAACCCCAAGTTCAATTTCTTAAATCCCAATGACCCTTACCATGCCTACT
ACCGCCACAAGGTCAGCGAGTTCAAGGAGGGGAAGGCTCAGGAGCCCTCAGCTGCCATCCCCAAGGTTAT
GCAGCAGCAGCAGCAAGCTACGCAACAGCAGCTGCCCCAGAAGGTCCAAGCCCAGGTGATCCAAGAGACC
ATAGTACCGAAGGAGCCCCCTCCTGAGTTTGAGTTCATCGCTGATCCCCCCTCCATCTCAGCCTTCGACC
TGGATGTAGTGAAGCTGACAGCTCAGTTTGTGGCCAGGAATGGGCGTCAGTTTCTGACCCAGCTGATGCA
GAAAGAGCAGCGCAACTACCAGTTTGACTTTCTCCGACCCCAGCACAGCCTCTTCAACTACTTCACAAAG
CTGGTGGAGCAGTATACCAAGATCTTGATTCCACCCAAAGGCTTATTTTCAAAGCTCAAGAAAGAGGCTG
AAAATCCTCGAGAAGTTTTGGACCAGGTTTGTTACCGAGTAGAATGGGCCAAATTTCAGGAACGTGAGAG
GAAGAAGGAAGAAGAGGAGAAAGAGAAGGAGCGAGTAGCTTATGCTCAGATTGACTGGCATGATTTTGTG
GTGGTGGAGACAGTGGATTTTCAACCCAATGAGCAAGGAAACTTTCCACCCCCAACAACACCAGAGGAAC
TGGGAGCTCGGATCCTCATTCAGGAGCGCTACGAGAAGTTTGGGGAGAGCGAGGAAGTGGAGATGGAGGT
TGAGTCAGATGAGGAAGATCAGGAGAAGGCCGAGGAGACTCCTTCCCAGCTGGACCAGGATACTCAAGTA
CAGGACATGGATGAGGGTTCAGATGATGAAGAAGAAGGGCAGAAAGTGCCTCCACCCCCAGAGACACCCA
TGCCTCCACCTCTGCCCCCAACACCAGACCAAGTCATTGTGCGGAAGGACTATGATCCCAAAGCTTCCAA
GCCCCTCCCTCCAGCCCCTGCTCCCGATGAGTATCTTGTATCCCCCATCACTGGGGAGAAGATTCCTGCC
AGCAAAATGCAGGAGCACATGCGCATTGGGCTTCTTGACCCCCGCTGGCTGGAGCAGCGGGACCGCTCCA
TCCGAGAGAAGCAGAGTGATGATGAGGTTTATGCACCAGGTCTGGATATTGAGAGCAGCTTAAAGCAGTT
GGCTGAGCGACGTACTGACATCTTTGGGGTAGAAGAGACAGCCATTGGTAAGAAGATTGGTGAAGAGGAG
ATCCAGAAGCCAGAGGAGAAGGTGACTTGGGATGGCCATTCAGGCAGCATGGCCCGGACCCAGCAGGCTG
CCCAGGCCAACATCACCCTCCAGGAGCAGATTGAGGCCATCCATAAGGCCAAGGGCCTGGTGCCGGAAGA
TGACACTAAGGAGAAGATTGGCCCCAGCAAGCCCAATGAAATCCCTCAGCAGCCACCACCTCCATCTTCA
GCCACCAATATCCCCAGCTCAGCACCCCCCATTACATCAGTGCCCCGGCCACCTGCGATGCCACCTCCAG
TCCGCACCACTGTTGTATCTGCAGTACCTGTCATGCCTCGGCCACCCATGGCATCTGTGGTCCGGCTGCC
CCCAGGCTCAGTGATTGCCCCCATGCCACCCATCATCCACGCACCCAGGATCAATGTGGTACCTATGCCT
CCTGCAGCACCTCCCATCATGGCGCCCCGCCCACCTCCCATGATTGTGCCAACAGCCTTTGTGCCTGCCC
CACCTGTGGCTCCAGTCCCAGCCCCAGCTCCAATGCCTCCTGTACACCCCCCACCTCCTATGGAGGATGA
GCCTCCATCCAAGAAACTAAAGACCGAGGACAGTCTCATGCCTGAGGAAGAATTCCTGCGCAGGAACAAG
GGTCCAGTATCCATCAAAGTGCAGGTACCCAACATGCAGGATAAGACGGAATGGAAGCTGAATGGTCAGG
GGCTGGTCTTCACTCTCCCACTCACAGACCAGGTCTCTGTCATCAAAGTGAAGATTCATGAAGCCACGGG
CATGCCTGCGGGGAAACAGAAACTACAGTATGAAGGCATCTTCATCAAGGATTCCAACTCCCTGGCTTAC
TACAACATGGCCAGTGGTGCTGTCATCCACTTGGCCCTCAAGGAGAGAGGCGGCAGGAAGAAGTAG

Translation (791 aa):
MQAGPVQAVPPPPPVATESKQPIEEEASSKEDPTPSKPVVGIIYPPPEVRNIVDKTASFVARNGPEFEAR
IRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQQQATQQQLPQKVQAQVIQET
IVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTK
LVEQYTKILIPPKGLFSKLKKEAENPREVLDQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFV
VVETVDFQPNEQGNFPPPTTPEELGARILIQERYEKFGESEEVEMEVESDEEDQEKAEETPSQLDQDTQV
QDMDEGSDDEEEGQKVPPPPETPMPPPLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPA
SKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIGEEE
IQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDDTKEKIGPSKPNEIPQQPPPPSS
ATNIPSSAPPITSVPRPPAMPPPVRTTVVSAVPVMPRPPMASVVRLPPGSVIAPMPPIIHAPRINVVPMP
PAAPPIMAPRPPPMIVPTAFVPAPPVAPVPAPAPMPPVHPPPPMEDEPPSKKLKTEDSLMPEEEFLRRNK
GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAY
YNMASGAVIHLALKERGGRKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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