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Report for CCDS20459.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20459.1 Public Mus musculus 6 Zfp422 23 108 98 CCDS HistoryNCBI Gene:67255Re-query CCDS DB by CCDS ID:20459.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20459.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079749.5 ENSMUSP00000078685.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079749.5Link to Ensembl Protein Viewer:ENSMUSP00000078685.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000079749Re-query CCDS DB by Protein ID:ENSMUSP00000078685
Original member Current member EBI ENSMUST00000057540.5 ENSMUSP00000084926.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057540.5Link to Ensembl Protein Viewer:ENSMUSP00000084926.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000057540Re-query CCDS DB by Protein ID:ENSMUSP00000084926
Original member Current member EBI ENSMUST00000112880.7 ENSMUSP00000108501.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112880.7Link to Ensembl Protein Viewer:ENSMUSP00000108501.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112880Re-query CCDS DB by Protein ID:ENSMUSP00000108501
Original member Current member NCBI NM_001302439.1 NP_001289368.1 Accepted alive Link to Nucleotide Sequence:NM_001302439.1Link to Protein Sequence:NP_001289368.1Re-query CCDS DB by Nucleotide ID:NM_001302439Re-query CCDS DB by Protein ID:NP_001289368Link to BLAST:NP_001289368.1
Original member Current member NCBI NM_001302440.1 NP_001289369.1 Accepted alive Link to Nucleotide Sequence:NM_001302440.1Link to Protein Sequence:NP_001289369.1Re-query CCDS DB by Nucleotide ID:NM_001302440Re-query CCDS DB by Protein ID:NP_001289369Link to BLAST:NP_001289369.1
Original member Current member NCBI NM_026057.3 NP_080333.1 Accepted alive Link to Nucleotide Sequence:NM_026057.3Link to Protein Sequence:NP_080333.1Re-query CCDS DB by Nucleotide ID:NM_026057Re-query CCDS DB by Protein ID:NP_080333Link to BLAST:NP_080333.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289368.1 237 Q9ERU3 237 100% 0 0
NP_001289369.1 237 Q9ERU3 237 100% 0 0
NP_080333.1 237 Q9ERU3 237 100% 0 0

Chromosomal Locations for CCDS 20459.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116626323 116627036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGAGGTTAGGAAAGCCCAAAGGGGGTATTTCTCGAAGCGCCAGCCAAGGAAAAGCCTATGAGAGCAAGC
GCAAGACAGCCCGCCAGCGACAGAAATGGGGGGTGGCCATTCGCTTCGACTCGGGCTTGAGTCGACGGAG
AAGGAACGTGGACGAGAAGCCTTACAAGTGTGCTAAATGCTCCAAGAGTTTCAGTCAGAGCTCCACGCTC
TTTCAGCACAAGAAGATCCATACTGGGAAGAAATCCCATAAATGTGCCGATTGTGGGAAAAGTTTCTTTC
AGAGTTCTAACCTCATCCAGCACCGGCGGATCCACACGGGGGAAAAGCCCTATAAGTGTGACGAGTGTGG
AGAGAGATTCAAGCAGAGCTCCAATCTCATCCAGCACCAGAGGATCCACACCGGCGAGAAGCCCTACTGC
TGTGATGAGTGTGGCCGGTGCTTTAGCCAGAGTTCCCACCTCATTCAGCACCAGAGAACCCACACCGGAG
AGAAGCCCTACCAGTGTGAGGAGTGTGACAAGTGCTTCAGCCAGAGCTCCCATCTGAGGCAGCACATGAA
GGTGCACAAAGAAAAGAAGCCACATAAGAGGGGCAAAAATGCCAGGGTGAAAACTCACCCGGTGTCCTGG
AAAAGGGGCAAAGGGAGGAAGGCGGTGGCTGGGATCCGCCAGGTAAAGGGAGCCACTTCCGGCCTTTTTA
AAAAGAAGAAGTGA

Translation (237 aa):
MRLGKPKGGISRSASQGKAYESKRKTARQRQKWGVAIRFDSGLSRRRRNVDEKPYKCAKCSKSFSQSSTL
FQHKKIHTGKKSHKCADCGKSFFQSSNLIQHRRIHTGEKPYKCDECGERFKQSSNLIQHQRIHTGEKPYC
CDECGRCFSQSSHLIQHQRTHTGEKPYQCEECDKCFSQSSHLRQHMKVHKEKKPHKRGKNARVKTHPVSW
KRGKGRKAVAGIRQVKGATSGLFKKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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