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Report for CCDS27217.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27217.1 Public Mus musculus 14 Ccdc25 23 108 98 CCDS HistoryNCBI Gene:67179Re-query CCDS DB by CCDS ID:27217.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27217.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022614.6 ENSMUSP00000022614.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022614.6Link to Ensembl Protein Viewer:ENSMUSP00000022614.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000022614Re-query CCDS DB by Protein ID:ENSMUSP00000022614
Original member Current member NCBI NM_145944.5 NP_666056.1 Accepted alive Link to Nucleotide Sequence:NM_145944.5Link to Protein Sequence:NP_666056.1Re-query CCDS DB by Nucleotide ID:NM_145944Re-query CCDS DB by Protein ID:NP_666056Link to BLAST:NP_666056.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666056.1 208 Q78PG9 208 100% 0 0

Chromosomal Locations for CCDS 27217.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 65837457 65837484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65840448 65840495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65846296 65846335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65851617 65851668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65854102 65854177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65856424 65856527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65856694 65856896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65860170 65860215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65865130 65865159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGGTGTTCTACTTCACCAGCAGCAGCGTTAATTCATCTACTTACACTATTTACATGGGAAAGGATAAAT
ATGAAAATGAAGATCTGATAAAGTATGGCTGGCCTGAAGATATTTGGTTTCACGTGGACAAACTCTCTTC
GGCCCATGTGTACCTACGATTACAAAAGGGAGAGAAGATAGAAGACATTCCAAAGGAGGTTTTGATGGAC
TGTGCCCACCTTGTGAAGGCCAATAGCATTCAAGGCTGCAAGATGAACAACGTTAATGTGGTTTACACGC
CATGGTCTAACCTGAAGAAAACAGCTGACATGGATGTGGGGCAGATAGGCTTTCACAGGCAGAAGGATGT
AAAGATTGTGACGGTAGAGAAGAAAGTGAATGAAATCTTGAACCGATTAGAAAAGACCAAACTGGAGAAG
TTTCCAGACCTTGCAGCAGAGAAGGAAGGCAGAGACCGTGAAGAGAGGAATGAGAAGAAAGCCCAGATTC
AGGAGATGAAAAGGAAAGAGAAAGAAGAAATGAAGAAGAAAAGGGAAATGGATGAACTTAGGAGCTACTC
ATCACTCATGAAAGTTGAGAATATGTCCTCAAATCAAGATGGTAACGATTCCGATGAGTTCATGTGA

Translation (208 aa):
MVFYFTSSSVNSSTYTIYMGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLQKGEKIEDIPKEVLMD
CAHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQKDVKIVTVEKKVNEILNRLEKTKLEK
FPDLAAEKEGRDREERNEKKAQIQEMKRKEKEEMKKKREMDELRSYSSLMKVENMSSNQDGNDSDEFM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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