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Report for CCDS39266.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39266.1 Public Mus musculus 5 Psmd9 23 108 98 CCDS HistoryNCBI Gene:67151Re-query CCDS DB by CCDS ID:39266.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39266.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100729.8 ENSMUSP00000098295.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100729.8Link to Ensembl Protein Viewer:ENSMUSP00000098295.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000100729Re-query CCDS DB by Protein ID:ENSMUSP00000098295
Original member Current member NCBI NM_026000.2 NP_080276.2 Accepted alive Link to Nucleotide Sequence:NM_026000.2Link to Protein Sequence:NP_080276.2Re-query CCDS DB by Nucleotide ID:NM_026000Re-query CCDS DB by Protein ID:NP_080276Link to BLAST:NP_080276.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080276.2 222 Q9CR00 222 100% 0 0

Chromosomal Locations for CCDS 39266.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 123228307 123228444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123234594 123234696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123239542 123239750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123241832 123241933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123246194 123246282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123248293 123248320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (669 nt):
ATGTCGGGTGAAGACGTTCCGCACCGGGCAGAGTCCTCCGAGGCCCGTGCGGCCGCGGTCAGCGACATCC
AGGATCTGATGCGACGCAAGGAGGAGATCGAGGCGGAGATCAAGGCTAATTACGACGTCCTGGAGAGCCA
AAAAGGAATTGGCATGAACGAACCGCTGGTGGACTGTGAGGGCTATCCCCGGGCGGATGTGGACTTGTAC
CAGGTCCGAACAGCAAGGCACAACATCATCTGTCTCCAGAATGATCACAAGGCACTGATGAAGCAAGTGG
AGGAGGCCCTGCACCAGCTGCACGCTCGGGACAAAGAGAAGCAGGCTCGGGACATGGCTGAAGCCCGAGA
AGAGGCCATGAACCGCAGGCTGGCCTCCAACAGCCCCGTCCTGCCCCAGGCCTTTGCCAGAGTGAACAGT
ATCAGCCCCGGTTCCCCAGCCAGTATTGCGGGCCTGCAAGTGGATGACGAAATTGTGGAGTTCGGCTCCG
TGAACACCCAAAACTTCCAGTCAGTGCAGAACGTGGGCACTGTGGTGCAGCATAGCGAGGGGAAGCCCCT
GAATGTGACGGTGATCCGCAGAGGAGAGAAGCACCAGCTCAGACTGATTCCAACCCGCTGGGCAGGAAAA
GGACTGCTGGGCTGCAACATTATTCCTCTCCAGAGATGA

Translation (222 aa):
MSGEDVPHRAESSEARAAAVSDIQDLMRRKEEIEAEIKANYDVLESQKGIGMNEPLVDCEGYPRADVDLY
QVRTARHNIICLQNDHKALMKQVEEALHQLHARDKEKQARDMAEAREEAMNRRLASNSPVLPQAFARVNS
ISPGSPASIAGLQVDDEIVEFGSVNTQNFQSVQNVGTVVQHSEGKPLNVTVIRRGEKHQLRLIPTRWAGK
GLLGCNIIPLQR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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