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Report for CCDS56683.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56683.1 Public Mus musculus 10 Fbxo5 23 108 98 CCDS HistoryNCBI Gene:67141Re-query CCDS DB by CCDS ID:56683.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56683.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019907.7 ENSMUSP00000019907.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019907.7Link to Ensembl Protein Viewer:ENSMUSP00000019907.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000019907Re-query CCDS DB by Protein ID:ENSMUSP00000019907
Original member NCBI NM_025995.2 NP_080271.2 Updated not alive Link to Nucleotide Sequence:NM_025995.2Link to Protein Sequence:NP_080271.2Re-query CCDS DB by Nucleotide ID:NM_025995Re-query CCDS DB by Protein ID:NP_080271
Current member NCBI NM_025995.3 NP_080271.2 Accepted alive Link to Nucleotide Sequence:NM_025995.3Link to Protein Sequence:NP_080271.2Re-query CCDS DB by Nucleotide ID:NM_025995Re-query CCDS DB by Protein ID:NP_080271Link to BLAST:NP_080271.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080271.2 421 Q7TSG3 421 100% 0 0

Chromosomal Locations for CCDS 56683.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 5799571 5799822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5800256 5800435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5801152 5801242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5801869 5802532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5805259 5805337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGAGCCGGCGCACCTGCAGTGACCTGCGCCGGCCGTCCTCCTGTCCCTGCCGTCTTGGCGCGCGGACTA
CCGTGGACGGTTGTAAAGAAGAAAGCCCTGTTCTTTCTGTTACAATGAAGTGTTTTAATTGCAACCCTGA
TCTTTCCGAGCTTGAAGTGGTGAAGCCTGAGGACAGTGGGATAGAAGCTTCCTACAGTCCCGTGTGTTTG
GAACCTTCCTGTAATGACTGTGTTAGAAACCATGAGAGGTTGTCTTTCATCGACTCACCAATTGTGGGAC
ATGATAACAAGGAAAATCAACGCGTACAAAACACACTAGATAGTTCAAACGAAACAGAAGAGCTAGAGGC
CAGTAGACTGTATGAGGACAGTGGCTACTCATCTTTCACACAAAGTGACCGTGACGATGGCATCCTTATC
CTGGAGAATTTCAGAAACAGTCCCCAGGCCCGTCTGCTGCCATCACAGAGCCCGGACCAGCATCCCAACA
AAACCTTGCTGCCTGTCCTGCATTTTGAAAGAGTGGTTTGCTCAACACTAAAAAAGAATGGCAAGCGAAA
CCCTAAAGTGGATCGAGAAATGCTGAAGGAAGTTATTGCCAGCGGGAACTTTAGACTGCAAAATATAATT
GGCAAGAAAATGGGCCTGGAGCACCTAGACATCCTGGCTGAGCTCTCCCGCAGGGGATTCGTGCACCTGT
TGGCTAACATTTTGACTAAGCTCAGCGGCATGGACTTAGTAAATCTGTCTAAAGTGAGCAGAATTTGGAA
GAAGATACTGGAAAACAATAAGGGGGCGTTCCAGCTCTACAGCAAAACCATGCAGCGAGTCATTGAAAGC
AGTAAGTTGTCACTACATGCTACAACGAGAGGATATGTTGTGGGCAGAGCTGCACTAACTTGTGTTCAAA
AGTCATCGACCTGGGCACCTCCCAAAAAAGATGTTCAAATCAAGTCCTCCAGTCAGCGTGGTCAGAGAGT
TTCTACCTACAGCCGGCACAATGAGTTCGTGGAGGTGGCAAAGACATTGAAGAACAACGAAAGCCTCAAA
GCCTGTGTTCGCTGTAATTTCCCTGCAAAATATGACCACTATTTAGAGCGAGCAGTCTGCAAACGGGAAA
GCTGTCAATTTGAATATTGTACAAAGTGTCTGTGTGCTTACCATAACAACAAAGACTGTTTGAATGGCAA
GATCCTAAAAGCCAGCTGTAAAGTGGGTCCTTTGCCTGGAACTAAAAAGAGTAAAAAGAACTTACAAAGA
TTGTGA

Translation (421 aa):
MSRRTCSDLRRPSSCPCRLGARTTVDGCKEESPVLSVTMKCFNCNPDLSELEVVKPEDSGIEASYSPVCL
EPSCNDCVRNHERLSFIDSPIVGHDNKENQRVQNTLDSSNETEELEASRLYEDSGYSSFTQSDRDDGILI
LENFRNSPQARLLPSQSPDQHPNKTLLPVLHFERVVCSTLKKNGKRNPKVDREMLKEVIASGNFRLQNII
GKKMGLEHLDILAELSRRGFVHLLANILTKLSGMDLVNLSKVSRIWKKILENNKGAFQLYSKTMQRVIES
SKLSLHATTRGYVVGRAALTCVQKSSTWAPPKKDVQIKSSSQRGQRVSTYSRHNEFVEVAKTLKNNESLK
ACVRCNFPAKYDHYLERAVCKRESCQFEYCTKCLCAYHNNKDCLNGKILKASCKVGPLPGTKKSKKNLQR
L


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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