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Report for CCDS22965.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22965.1 Public Mus musculus 9 Pus3 23 108 98 CCDS HistoryNCBI Gene:67049Re-query CCDS DB by CCDS ID:22965.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22965.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034615.9 ENSMUSP00000034615.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034615.9Link to Ensembl Protein Viewer:ENSMUSP00000034615.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000034615Re-query CCDS DB by Protein ID:ENSMUSP00000034615
Original member Current member NCBI NM_023292.5 NP_075781.3 Accepted alive Link to Nucleotide Sequence:NM_023292.5Link to Protein Sequence:NP_075781.3Re-query CCDS DB by Nucleotide ID:NM_023292Re-query CCDS DB by Protein ID:NP_075781Link to BLAST:NP_075781.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075781.3 481 Q9JI38 481 100% 0 0

Chromosomal Locations for CCDS 22965.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 35564817 35565197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35565290 35565855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35566421 35566919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1446 nt):
ATGGCTGAAAACACAGACAGAAACCAGATTGAGAAACTCCTAAACAGAGTGAAGGAACTGGAACAGGAGG
TGGAAAGACTTAAGAAAAAGAAAGAACAGGCCAACAATATAAAAGACTCAAGCATCAGAGAAAATTCGTT
AGGCTCTGGAAAAGCTAAGCGTGCTTTTGATTTCAGTGCTCATGGCCGTAGACATGTAGCTCTAAAAATA
GCCTATCTAGGCTGGGGATACCAGGGCTTTGCCAGTCAGGAAAACACAAGCAATACAATTGAAGAGAAAC
TGTTTGAGGCTTTAACTAAGACCCGACTAGTAGAAAGCAGACAGACATCCAACTATCATAGGTGTGGTCG
AACAGACAAAGGTGTTAGTGCCTTTGGACAGGTGATTTCTTTAGACCTACGTTCTCAGTTTCCAACGAGC
AGGGATTCAGAAGATTCTAATTTAAAGCATGAAGCTGATGATCTTGCTAAAGAGATCCGTTATACTCACA
TTCTCAATCGGGTGCTTCCTGCAGACATCCGAGTATTGGCCTGGGCCCCTGTAGAACCTAGCTTCAGTGC
TAGGTTTAGCTGTCTTGAGCGGACTTATCGCTATTTTTTCCCTCGTGCGGATTTAGATATTGCAACCATG
AATTATGCAGCTCAGAAATATGTTGGCACTCATGATTTCAGAAACTTGTGTAAAATGGATGTAGCCAATG
GAGTGATTAATTTTCAGAGGACTATTCTGTGTGCACAAGTACAACTAGTGGCCCAGAGCCCAGGCGAGGA
GAGAAGGCAAGAACCATTCCAGTTATGTCAATTTGAAGTAATTGGCCAGGCATTCTTGTACCATCAAGTT
CGGTGTATGATGGCTATCCTCTTCCTGATTGGCCAAGGAATGGAGAAGCCAGAGATTATTGATGAATTGC
TGAACATACAGAAAAATCCCCAGAAACCTCAATATAGCATGGCTGTTGAATTTCCTCTAGTCTTATATGA
CTGTAAATTTGAAAATACCAAGTGGATTTATGATCATGAGGTTCAGGAATTCAATGTTACCCACCTACAA
CAGCTGTGGGCTAATCATGCTGTTAAAACTCACATGCTATATAGTATGCTGCAAGGTCTAGACTCTGTTA
TGGTAACATGTGCAGCAGGAACAAAGATGGATGAAGCAACAGAATGGAGAAACATTCAACCCCCTGTCAT
AAAGCACACGAGTGCCTTTGTAGAAGGAGTGAAAATGCGCACATATAAGCCCCTCATGGATCGTCCCAAG
TGCCAAGGACTGGAATCCCGGATCCGGCATTTTGTGAGTAGAGGCAGAATTGAGCACCCACATTTACTCC
ATAAGGAAGAAATAAAAGCCAGAAGGGACTGTGCTGACAAAGAAGAAAATACTGTTGTAGAGAATCCAAG
TAAGAGGGTTTGTATAATAGATGCAGAAATTAACAGCATTGCATAA

Translation (481 aa):
MAENTDRNQIEKLLNRVKELEQEVERLKKKKEQANNIKDSSIRENSLGSGKAKRAFDFSAHGRRHVALKI
AYLGWGYQGFASQENTSNTIEEKLFEALTKTRLVESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPTS
RDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDIATM
NYAAQKYVGTHDFRNLCKMDVANGVINFQRTILCAQVQLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQV
RCMMAILFLIGQGMEKPEIIDELLNIQKNPQKPQYSMAVEFPLVLYDCKFENTKWIYDHEVQEFNVTHLQ
QLWANHAVKTHMLYSMLQGLDSVMVTCAAGTKMDEATEWRNIQPPVIKHTSAFVEGVKMRTYKPLMDRPK
CQGLESRIRHFVSRGRIEHPHLLHKEEIKARRDCADKEENTVVENPSKRVCIIDAEINSIA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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