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Report for CCDS17225.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17225.1 Public Mus musculus 2 Polr3k 23 108 98 CCDS HistoryNCBI Gene:67005Re-query CCDS DB by CCDS ID:17225.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17225.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039551.8 ENSMUSP00000044582.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039551.8Link to Ensembl Protein Viewer:ENSMUSP00000044582.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000039551Re-query CCDS DB by Protein ID:ENSMUSP00000044582
Original member Current member NCBI NM_025901.3 NP_080177.1 Accepted alive Link to Nucleotide Sequence:NM_025901.3Link to Protein Sequence:NP_080177.1Re-query CCDS DB by Nucleotide ID:NM_025901Re-query CCDS DB by Protein ID:NP_080177Link to BLAST:NP_080177.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080177.1 108 Q9CQZ7 108 100% 0 0

Chromosomal Locations for CCDS 17225.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 181864459 181864569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181865946 181866033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181868204 181868331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (327 nt):
ATGCTGTTGTTCTGCCCGGGCTGCGGGAACGGACTCATTGTGGAGGAGGGGCAGCGTTGCCATCGCTTCG
CCTGCAACACTTGCCCCTACGTCCATAATATCACCCGTAAGGTAACAAACCGAAAGTATCCAAAGCTAAA
AGAAGTGGACGACGTGCTTGGTGGAGCAGCTGCATGGGAGAATGTGGACTCTACTGCAGAGCCATGTCCA
AAATGCGAACATCCCCGTGCCTACTTCATGCAGCTTCAGACGCGTTCTGCAGACGAGCCAATGACCACCT
TCTATAAGTGCTGCAATGCTCAGTGTGGACATCGCTGGAGGGATTAA

Translation (108 aa):
MLLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWENVDSTAEPCP
KCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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