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Report for CCDS54531.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54531.1 Public Homo sapiens 22 APOBEC3H 24 110 108 CCDS HistoryNCBI Gene:164668Re-query CCDS DB by CCDS ID:54531.1Re-query CCDS DB by GeneID:164668See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54531.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000348946.8 ENSP00000216123.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000348946.8Link to Ensembl Protein Viewer:ENSP00000216123.5Re-query CCDS DB by Nucleotide ID:ENST00000348946Re-query CCDS DB by Protein ID:ENSP00000216123
Original member Current member NCBI NM_001166002.3 NP_001159474.2 Accepted alive Link to Nucleotide Sequence:NM_001166002.3Link to Protein Sequence:NP_001159474.2Re-query CCDS DB by Nucleotide ID:NM_001166002Re-query CCDS DB by Protein ID:NP_001159474Link to BLAST:NP_001159474.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159474.2 182 Q6NTF7-2 182 100% 0 0

Chromosomal Locations for CCDS 54531.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 39100279 39100428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 39101237 39101504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 39101918 39102042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 39103692 39103697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (549 nt):
ATGGCTCTGTTAACAGCCGAAACATTCCGCTTACAGTTTAACAACAAGCGCCGCCTCAGAAGGCCTTACT
ACCCGAGGAAGGCCCTCTTGTGTTACCAGCTGACGCCGCAGAATGGCTCCACGCCCACGAGAGGCTACTT
TGAAAACAAGAAAAAGTGCCATGCAGAAATTTGCTTTATTAACGAGATCAAGTCCATGGGACTGGACGAA
ACGCAGTGCTACCAAGTCACCTGTTACCTCACGTGGAGCCCCTGCTCCTCCTGTGCCTGGGAGCTGGTTG
ACTTCATCAAGGCTCACGACCATCTGAACCTGGGCATCTTCGCCTCCCGCCTGTACTACCACTGGTGCAA
GCCCCAGCAGAAGGGGCTGCGGCTTCTGTGTGGATCCCAGGTCCCGGTGGAGGTCATGGGCTTCCCAGAG
TTTGCTGACTGCTGGGAAAACTTTGTGGACCACGAGAAACCGCTTTCCTTCAACCCCTATAAGATGTTAG
AGGAGCTAGATAAAAACAGTCGAGCCATAAAGCGACGGCTTGAGAGGATAAAGTCCTGA

Translation (182 aa):
MALLTAETFRLQFNNKRRLRRPYYPRKALLCYQLTPQNGSTPTRGYFENKKKCHAEICFINEIKSMGLDE
TQCYQVTCYLTWSPCSSCAWELVDFIKAHDHLNLGIFASRLYYHWCKPQQKGLRLLCGSQVPVEVMGFPE
FADCWENFVDHEKPLSFNPYKMLEELDKNSRAIKRRLERIKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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