NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19021.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19021.1 Public Mus musculus 4 Pex10 23 108 98 CCDS HistoryNCBI Gene:668173Re-query CCDS DB by CCDS ID:19021.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19021.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103180.3 ENSMUSP00000099469.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103180.3Link to Ensembl Protein Viewer:ENSMUSP00000099469.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103180Re-query CCDS DB by Protein ID:ENSMUSP00000099469
Original member Current member NCBI NM_001042407.1 NP_001035866.1 Accepted alive Link to Nucleotide Sequence:NM_001042407.1Link to Protein Sequence:NP_001035866.1Re-query CCDS DB by Nucleotide ID:NM_001042407Re-query CCDS DB by Protein ID:NP_001035866Link to BLAST:NP_001035866.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035866.1 324 B1AUE5 324 100% 0 0

Chromosomal Locations for CCDS 19021.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155067069 155067174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155067823 155067903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155068663 155069069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155070387 155070562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155070641 155070776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155071705 155071773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGGCGCGGGCGGGTGCCCCTGAAGTGATCCGGGCAGCGCAGAAGGACGAGTACTACCTGGGAGGCCTGC
GGAGCGCGGCGGGTGAAGCGCTGCACAGCCTAGCGGGTGCAAAGAAATGGCTGGAATGGAGGAAAGAGAT
CGAGTTGCTCTCGGACATAGCCTACTTTGGCCTCACCACAATTGCAGGCTACCAGACCCTTGGGGAGGAG
TACGTTGGGATCATCCAAGTGGACCCATCCCAGCAGCGTGTGCCCTCCAGGCTCCGCCGTGCAGCGCTGG
TTGCACTGCATGCTGTCTTGCCCTACCTGCTAGACAAGGCACTGCTGCCCCTGGAGCAGGAGCTGCAAGC
CGATGGCGATGCTCCCCGGGCTTCACAGGGCAGTCTGCTACCTGGAGGACGCAGCCGATCAGGGGCACGG
CGCTGGGTGCGTCACCACGCAGCCACCCTGACTGAACAACAGAGGAAGGCCCTCCAGCGGGCAGTCTTCA
TCCTGAGACAGGGCTTCGCCTGCCTCCATCGGCTCCACGTGGCTTGGTTTTATATTCATGGTACCTTCTA
CCACCTGGCCAAGAGACTAGCAGGGATCACGTATCTCCGCACTCGTCGCCTGCCTGGAGAGGACCAGAAG
GCTCGCACTAGCTACGGACTGCTGGGGCTGATCTCCCTCTTGCATCTGGTGCTGTCCATGGGGCTGCGGT
TGTACAGCTTCAGGCAGAAGCAGCGAGCCAGGAAGGAGTGGCGGCTGCACCGCAATCTATCCCACCGCAG
GAGTTCCCTTGAAGACAGAGCCGTGTGCAGAACCCCACTCTGCACCCTATGCTTAGAGGAACGAAGACAC
TCCACGGCCACACCTTGTGGCCATCTCTTCTGCTGGGAGTGCATCACCGAGTGGTGCAACACCAAGACAG
AATGTCCCCTGTGCCGGGAGAAGTTTCCACCTCAGAAGCTGGTCTACCTGAGACACTACCGCTGA

Translation (324 aa):
MARAGAPEVIRAAQKDEYYLGGLRSAAGEALHSLAGAKKWLEWRKEIELLSDIAYFGLTTIAGYQTLGEE
YVGIIQVDPSQQRVPSRLRRAALVALHAVLPYLLDKALLPLEQELQADGDAPRASQGSLLPGGRSRSGAR
RWVRHHAATLTEQQRKALQRAVFILRQGFACLHRLHVAWFYIHGTFYHLAKRLAGITYLRTRRLPGEDQK
ARTSYGLLGLISLLHLVLSMGLRLYSFRQKQRARKEWRLHRNLSHRRSSLEDRAVCRTPLCTLCLEERRH
STATPCGHLFCWECITEWCNTKTECPLCREKFPPQKLVYLRHYR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH