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Report for CCDS25260.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25260.1 Public Mus musculus 11 Chad 23 108 98 CCDS HistoryNCBI Gene:12643Re-query CCDS DB by CCDS ID:25260.1Re-query CCDS DB by GeneID:12643See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25260.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040418.8 ENSMUSP00000047844.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040418.8Link to Ensembl Protein Viewer:ENSMUSP00000047844.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000040418Re-query CCDS DB by Protein ID:ENSMUSP00000047844
Original member Current member NCBI NM_007689.5 NP_031715.1 Accepted alive Link to Nucleotide Sequence:NM_007689.5Link to Protein Sequence:NP_031715.1Re-query CCDS DB by Nucleotide ID:NM_007689Re-query CCDS DB by Protein ID:NP_031715Link to BLAST:NP_031715.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031715.1 358 O55226 358 100% 0 0

Chromosomal Locations for CCDS 25260.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 94565098 94565868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94567798 94567961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94568209 94568350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGGCCCGCGCGCTCTTATTCAGTCTGGTCTTTCTTGCCATCCTCCTGCCTGCGCTAGCCGCCTGCCCCC
AAAACTGCCACTGCCATGGAGATCTGCAGCATGTCATCTGCGACAAGGTGGGGCTGCAGAAGATCCCCAA
GGTATCAGAGACAACCAAACTGCTCAATCTCCAGCGCAACAACTTCCCGGTGCTGGCTGCCAACTCGTTT
CGGACCATGCCGAACCTGGTCTCCCTGCACCTGCAACACTGCAACATCCGCGAGGTGGCGGCTGGTGCCT
TCCGAGGCCTGAAGCAGCTTATCTACCTGTACCTGTCCCACAACGACATCCGGGTATTGCGAGCTGGAGC
CTTCGACGACCTGACTGAACTCACTTACCTCTATCTAGACCACAACAAAGTGTCGGAACTGCCCCGGGGG
TTGCTCTCTCCTCTGGTCAACCTCTTCATCTTGCAACTCAACAACAACAAAATCCGAGAGCTGCGTGCTG
GAGCTTTCCAGGGGGCCAAGGACCTGCGCTGGCTCTACCTGTCAGAAAATGCCCTCAGTTCCCTGCAGCC
TGGTTCCCTGGATGATGTGGAGAACCTAGCCAAGTTCCACCTGGACAAGAACCAGCTGTCTAGCTACCCC
TCAGCCGCCCTGAGCAAACTTCGGGTGGTGGAGGAGCTGAAGCTGTCTCACAACCCTCTGAAGAGCATCC
CAGACAATGCCTTCCAGTCCTTCGGTAGATATCTGGAGACCCTCTGGCTGGATAACACCAACCTGGAGAA
GTTCTCAGATGCTGCCTTCTCGGGTGTGACCACACTGAAACACGTCCATCTGGACAACAACCGCCTGAAC
CAACTGCCTTCCTCCTTCCCCTTTGACAACCTGGAGACCCTCACTCTCACCAACAACCCATGGAAATGCA
CCTGCCAGCTCCGTGGCCTTCGGCGGTGGTTGGAAGCCAAGGCTTCTCGACCGGATGCTACCTGCTCCTC
GCCAGCCAAGTTCAAGGGTCAGCGGATTCGTGACACAGATGCCCTTCGCAGCTGCAAATCCCCGACCAAG
AGGTCCAAGAAAGCTGGCCGCCATTAA

Translation (358 aa):
MARALLFSLVFLAILLPALAACPQNCHCHGDLQHVICDKVGLQKIPKVSETTKLLNLQRNNFPVLAANSF
RTMPNLVSLHLQHCNIREVAAGAFRGLKQLIYLYLSHNDIRVLRAGAFDDLTELTYLYLDHNKVSELPRG
LLSPLVNLFILQLNNNKIRELRAGAFQGAKDLRWLYLSENALSSLQPGSLDDVENLAKFHLDKNQLSSYP
SAALSKLRVVEELKLSHNPLKSIPDNAFQSFGRYLETLWLDNTNLEKFSDAAFSGVTTLKHVHLDNNRLN
QLPSSFPFDNLETLTLTNNPWKCTCQLRGLRRWLEAKASRPDATCSSPAKFKGQRIRDTDALRSCKSPTK
RSKKAGRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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