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Report for CCDS18467.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18467.1 Public Mus musculus 4 Cdkn2c 23 108 98 CCDS HistoryNCBI Gene:12580Re-query CCDS DB by CCDS ID:18467.1Re-query CCDS DB by GeneID:12580See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18467.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063531.4 ENSMUSP00000070313.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063531.4Link to Ensembl Protein Viewer:ENSMUSP00000070313.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000063531Re-query CCDS DB by Protein ID:ENSMUSP00000070313
Original member Current member EBI ENSMUST00000097921.9 ENSMUSP00000095534.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097921.9Link to Ensembl Protein Viewer:ENSMUSP00000095534.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097921Re-query CCDS DB by Protein ID:ENSMUSP00000095534
Original member NCBI NM_001301368.1 NP_001288297.1 Updated not alive Link to Nucleotide Sequence:NM_001301368.1Link to Protein Sequence:NP_001288297.1Re-query CCDS DB by Nucleotide ID:NM_001301368Re-query CCDS DB by Protein ID:NP_001288297
Current member NCBI NM_001301368.2 NP_001288297.1 Accepted alive Link to Nucleotide Sequence:NM_001301368.2Link to Protein Sequence:NP_001288297.1Re-query CCDS DB by Nucleotide ID:NM_001301368Re-query CCDS DB by Protein ID:NP_001288297Link to BLAST:NP_001288297.1
Original member NCBI NM_007671.3 NP_031697.1 Updated not alive Link to Nucleotide Sequence:NM_007671.3Link to Protein Sequence:NP_031697.1Re-query CCDS DB by Nucleotide ID:NM_007671Re-query CCDS DB by Protein ID:NP_031697
Current member NCBI NM_007671.4 NP_031697.1 Accepted alive Link to Nucleotide Sequence:NM_007671.4Link to Protein Sequence:NP_031697.1Re-query CCDS DB by Nucleotide ID:NM_007671Re-query CCDS DB by Protein ID:NP_031697Link to BLAST:NP_031697.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288297.1 168 Q60772 168 100% 0 0
NP_031697.1 168 Q60772 168 100% 0 0

Chromosomal Locations for CCDS 18467.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 109661249 109661626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109665018 109665146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGGCCGAGCCTTGGGGGAACGAGTTGGCGTCCGCAGCTGCCAGGGGGGACCTAGAGCAACTTACTAGTT
TGTTGCAAAATAATGTAAACGTCAACGCTCAAAATGGATTTGGGAGAACTGCGCTGCAGGTTATGAAACT
TGGAAATCCGGAGATTGCCAGGAGGCTTCTCCTCAGAGGTGCTAATCCCAATTTGAAAGATGGAACTGGT
TTTGCTGTCATTCATGATGCTGCCAGAGCAGGTTTCCTGGACACTGTACAGGCTTTGCTGGAGTTCCAGG
CTGATGTTAACATTGAAGATAATGAAGGGAACCTGCCCTTGCACTTGGCTGCCAAAGAAGGCCACCTCCC
TGTGGTGGAGTTCCTTATGAAGCACACAGCCTGCAATGTGGGGCATCGGAACCATAAGGGGGACACCGCC
TTCGACTTGGCCAGGTTCTATGGAAGAAATGAGGTCATTAGCCTGATGGAGGCAAATGGGGTTGGGGGAG
CCACAAGCCTGCAGTGA

Translation (168 aa):
MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPNLKDGTG
FAVIHDAARAGFLDTVQALLEFQADVNIEDNEGNLPLHLAAKEGHLPVVEFLMKHTACNVGHRNHKGDTA
FDLARFYGRNEVISLMEANGVGGATSLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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