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Report for CCDS25660.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25660.1 Public Mus musculus 11 Acox1 23 108 98 CCDS HistoryNCBI Gene:11430Re-query CCDS DB by CCDS ID:25660.1Re-query CCDS DB by GeneID:11430See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25660.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066587.11 ENSMUSP00000063325.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066587.11Link to Ensembl Protein Viewer:ENSMUSP00000063325.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000066587Re-query CCDS DB by Protein ID:ENSMUSP00000063325
Original member NCBI NM_015729.3 NP_056544.2 Updated not alive Link to Nucleotide Sequence:NM_015729.3Link to Protein Sequence:NP_056544.2Re-query CCDS DB by Nucleotide ID:NM_015729Re-query CCDS DB by Protein ID:NP_056544
Current member NCBI NM_015729.4 NP_056544.2 Accepted alive Link to Nucleotide Sequence:NM_015729.4Link to Protein Sequence:NP_056544.2Re-query CCDS DB by Nucleotide ID:NM_015729Re-query CCDS DB by Protein ID:NP_056544Link to BLAST:NP_056544.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056544.2 661 Q9R0H0-2 661 100% 0 0

Chromosomal Locations for CCDS 25660.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 116173548 116173598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116174293 116174499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116174631 116174774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116174988 116175093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116175205 116175384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116178120 116178310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116178682 116178844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116179608 116179777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116180291 116180406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116180943 116181062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116181913 116182020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116183464 116183624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116198222 116198381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116198596 116198704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1986 nt):
ATGAATCCCGATCTGCGCAAGGAGCGGGCCGCCGCCACCTTCAATCCAGAGTTAATCACGCACATCTTGG
ATGGTAGTCCGGAGAACACCCGGCGCCGTCGAGAAATCGAGAACTTGATTCTGAACGATCCAGACTTCCA
ACATGAGGACTATAACTTCCTCACTCGAAGCCAGCGTTACGAGGTGGCTGTTAAGAAGAGTGCCACCATG
GTGAAGAAGATGAGGGAATTTGGCATCGCAGACCCTGAAGAAATCATGTGGTTTAAAAACTCTGTGCACC
GAGGGCATCCTGAGCCTTTGGACCTTCACTTGGGCATGTTCCTGCCCACCTTGCTTCACCAGGCCACCGA
AGAGCAGCAGGAGCGTTTCTTCATGCCGGCCTGGAATCTGGAGATCACGGGCACTTATGCGCAGACAGAG
ATGGGTCATGGAACTCATCTTCGAGGCTTGGAAACCACTGCCACATATGACCCCAAGACCCAAGAGTTCA
TTCTCAACAGCCCAACTGTGACTTCCATCAAGTGGTGGCCTGGGGGGCTTGGGAAGACTTCCAATCATGC
GATAGTCCTGGCTCAGCTCATCACTCGAGGGGAGTGCTACGGGTTACATGCCTTTGTTGTCCCTATCCGT
GAGATTGGGACCCACAAGCCTCTGCCAGGCATCACTGTTGGGGATATCGGCCCCAAGTTTGGTTATGAAG
AGATGGATAATGGCTACCTGAAGATGGACAATTACCGTATTCCTAGAGAGAACATGTTGATGAAATATGC
CCAGGTGAAGCCTGACGGCACGTATGTAAAACCTCTGAGTAACAAGCTGACATATGGGACCATGGTTTTC
GTAAGGTCCTTCCTCGTGGGAAGTGCAGCTCAGAGTCTGTCCAAGGCATGCACCATTGCCATTCGATACA
GTGCTGTGAGGCGCCAGTCTGAAATCAAGAGAAGCGAGCCAGAGCCCCAGATTTTGGATTTTCAGACGCA
GCAGTATAAACTCTTCCCGCTCCTGGCCACCGCCTATGCCTTCCACTTTCTCGGAAGATACATAAAGGAG
ACCTACATGCGGATTAATGAGAGCATTGGCCAAGGCGACCTGAGTGAGCTGCCTGAGCTTCATGCCCTCA
CAGCTGGGCTGAAGGCTTTTACTACCTGGACAGCCAATGCTGGTATCGAAGAATGTCGGATGGCTTGCGG
TGGGCACGGCTATTCTCACAGCAGTGGGATTCCAAATATTTACGTCACGTTTACCCCGGCCTGCACCTTC
GAGGGGGAGAACACTGTTATGATGCTGCAGACGGCCAGGTTCTTGATGAAAATCTATGACCAGGTTCAGT
CGGGGAAGCTGGTGGGTGGTATGGTGTCGTACTTGAATGACCTGCCGAGCCAGCGTATCCAGCCGCAGCA
GGTGGCAGTCTGGCCAACTCTGGTGGACATTAACAGCCTGGACAGCCTGACAGAAGCCTACAAGCTACGT
GCAGCCAGATTGGTAGAAATTGCTGCAAAAAACCTTCAGGCCCAAGTGAGTCACAGGAAGAGCAAGGAAG
TGGCGTGGAACTTGACTTCTGTCGACCTTGTTCGCGCAAGTGAGGCGCACTGCCACTACGTGACCGTTAA
GGTCTTTGCAGATAAACTCCCCAAGATTCAAGACAGAGCCGTGCAAGCCGTGCTGAGGAACCTGTGTCTC
TTATATTCTCTCTATGGGATCAGCCAGAAAGGAGGGGATTTTCTTGAGGGGAACATCATCACAGGGGCTC
AGATGTCACAGGTAAACAGTCGGATCCTGGAGCTGCTCACAGTGACTCGCCCCAACGCTGTGGCTTTGGT
GGATGCCTTTGACTTTAAGGATGTGACCCTTGGCTCTGTTCTCGGCCGCTATGATGGCAATGTGTATGAA
AACTTGTTTGAGTGGGCCAAGAAGTCCCCACTGAACAAGACAGAGGTCCACGAATCTTACTACAAGCACT
TGAAGCCCCTGCAGTCGAAGCTTTGA

Translation (661 aa):
MNPDLRKERAAATFNPELITHILDGSPENTRRRREIENLILNDPDFQHEDYNFLTRSQRYEVAVKKSATM
VKKMREFGIADPEEIMWFKNSVHRGHPEPLDLHLGMFLPTLLHQATEEQQERFFMPAWNLEITGTYAQTE
MGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITRGECYGLHAFVVPIR
EIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNKLTYGTMVF
VRSFLVGSAAQSLSKACTIAIRYSAVRRQSEIKRSEPEPQILDFQTQQYKLFPLLATAYAFHFLGRYIKE
TYMRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRMACGGHGYSHSSGIPNIYVTFTPACTF
EGENTVMMLQTARFLMKIYDQVQSGKLVGGMVSYLNDLPSQRIQPQQVAVWPTLVDINSLDSLTEAYKLR
AARLVEIAAKNLQAQVSHRKSKEVAWNLTSVDLVRASEAHCHYVTVKVFADKLPKIQDRAVQAVLRNLCL
LYSLYGISQKGGDFLEGNIITGAQMSQVNSRILELLTVTRPNAVALVDAFDFKDVTLGSVLGRYDGNVYE
NLFEWAKKSPLNKTEVHESYYKHLKPLQSKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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