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Report for CCDS23212.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23212.1 Public Mus musculus 9 Snx33 23 108 98 CCDS HistoryNCBI Gene:235406Re-query CCDS DB by CCDS ID:23212.1Re-query CCDS DB by GeneID:235406See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23212.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050916.6 ENSMUSP00000060225.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050916.6Link to Ensembl Protein Viewer:ENSMUSP00000060225.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000050916Re-query CCDS DB by Protein ID:ENSMUSP00000060225
Original member Current member NCBI NM_175483.5 NP_780692.2 Accepted alive Link to Nucleotide Sequence:NM_175483.5Link to Protein Sequence:NP_780692.2Re-query CCDS DB by Nucleotide ID:NM_175483Re-query CCDS DB by Protein ID:NP_780692Link to BLAST:NP_780692.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780692.2 574 Q4VAA7 574 100% 0 0

Chromosomal Locations for CCDS 23212.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 56918451 56918704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56925313 56926783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGGCACTGAAAGGCCGAGCCCTCTATGATTTCCACAGTGAGAACAAGGAGGAAATCAGTATCCAGCAGG
ACGAAGAGCTGGTTATCTTCAGTGAGACCTCACTGGACGGCTGGCTGCAGGGACAGAACAGCCGTGGGGA
GACAGGGCTCTTCCCTGCTTCTTACGTCGAGATTGTCCGTCCTGGCATCAGCACCAACCATGTGGACTAT
TCCAACAGCCCTGCAGGCTCCCTGGGCACCCAGGGGAGTTTGTATAGCAGCCCGAGTATGGCCAGTCCAG
CCAGGAGTGGTGGGGGCAGCGGCTTCCTCTCAAACCCAGGAAGCTTCGAGGATGATGATGATGATGATTG
GGATGACTGGGATGATGGGTGCACAGTGGTAGAAGAGCCACTAGCTGGCGGCCTAGGTACCAATGGGCAC
CCTCCACTCAACCTCTCCTACCCGGGTGCCTACCCCAACCAGCATATGGCTTTCCGACCCAAGGCACCCC
TGGAAAGGCAGGACAGCCTGGCGTCTGCCAAGCGGGGCAGTGTGGTAGGACGGAACCTCAATCGTTTCTC
GTGCTTCGTACGCTCTGGAGTGGAGGCCTTCATCCTTGGTGATGTGCCCATGATGGCCAAGATTGCTGAG
ACTTACTCCATTGAGATGGGCCCACGTGGCCCTCAGTGGAAGGCCAACCCCCACCCATTTGCCTGCTCCA
TAGAGGACCCCACCAAACAGACCAAGTTCAAAGGCATTAAAAGTTACATCTCTTACAAGCTTACACCCAC
CCACGCAGGCTCGCCTGTTTACCGGCGCTACAAACACTTTGATTGGCTGTACAACCGCCTTCTACACAAG
TTCACAGTGATCTCAGTGCCCCACCTGCCTGAGAAGCAGGCCACAGGCCGCTTCGAAGAGGACTTCATCG
AGAAGCGCAAGCGAAGGCTCATCCTCTGGATGGACCACATGACCAGCCACCCTGTGCTCTCCCAGTATGA
GGGCTTCCAGCACTTCCTCAGCTGCCTGGATGACAAGCAGTGGAAGATGGGTAAGCGCCGGGCAGAGAAG
GATGAGATGGTGGGCGCCAGTTTTCTGCTCACTTTCCAGATCCCCACAGAGCACCAGGATCTGCAGGATG
TAGAGGACCGCGTGGATACATTCAAGGCTTTCAGTAAGAAGATGGATGACAGCGTCCTACAGCTTAGCAA
CGTGGCGGCGGAGCTGGTGCGGAAGCATGTGGGGGGCTTCCGCAAGGAATTCCAGAAGCTAGGAAGTGCC
TTCCAGGCCATTAGCCATGCCTTCCAGATGGACCCTCCCTTTAGGTCTGATGCTCTCAACAATGCCATTT
CTCACACTGGCCGGACCTATGAAACCGTTGGCGAAATGTTTGCGGAACAGCCCAAGCACGACCTCTTCCA
AATGCTTGACACACTGTCTCTCTACCAGGGCCTACTCTCCAACTTCCCTGACATTATCCACCTGCAGAAA
GGTGCCTTTGCCAAGGTGAAGGAAAGCCAGCGCATGAGTGATGAGGGCCGAATGGCTCAGGAAGAGGCAG
ATGGCATTCGCAGGCGCTGCCGTGTGGTAGGCTTCGCCCTGCAGGCCGAGATGAACCATTTCCACCAGCG
CCGTGAGCTCGATTTTAAGCATATGATGCAAAGCTACCTGCGCCAGCAGATTCTTTTCTACCAGCGGGTA
GGCCAGCAGCTGGAGAAGACTCTCCACATGTATGACCACCTCTGA

Translation (574 aa):
MALKGRALYDFHSENKEEISIQQDEELVIFSETSLDGWLQGQNSRGETGLFPASYVEIVRPGISTNHVDY
SNSPAGSLGTQGSLYSSPSMASPARSGGGSGFLSNPGSFEDDDDDDWDDWDDGCTVVEEPLAGGLGTNGH
PPLNLSYPGAYPNQHMAFRPKAPLERQDSLASAKRGSVVGRNLNRFSCFVRSGVEAFILGDVPMMAKIAE
TYSIEMGPRGPQWKANPHPFACSIEDPTKQTKFKGIKSYISYKLTPTHAGSPVYRRYKHFDWLYNRLLHK
FTVISVPHLPEKQATGRFEEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSCLDDKQWKMGKRRAEK
DEMVGASFLLTFQIPTEHQDLQDVEDRVDTFKAFSKKMDDSVLQLSNVAAELVRKHVGGFRKEFQKLGSA
FQAISHAFQMDPPFRSDALNNAISHTGRTYETVGEMFAEQPKHDLFQMLDTLSLYQGLLSNFPDIIHLQK
GAFAKVKESQRMSDEGRMAQEEADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQSYLRQQILFYQRV
GQQLEKTLHMYDHL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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