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Report for CCDS57459.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57459.1 Public Mus musculus 6 Prb1c 23 108 98 CCDS HistoryNCBI Gene:667929Re-query CCDS DB by CCDS ID:57459.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57459.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080849.5 ENSMUSP00000079660.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080849.5Link to Ensembl Protein Viewer:ENSMUSP00000079660.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000080849Re-query CCDS DB by Protein ID:ENSMUSP00000079660
Original member Current member NCBI NM_001177588.1 NP_001171059.1 Accepted alive Link to Nucleotide Sequence:NM_001177588.1Link to Protein Sequence:NP_001171059.1Re-query CCDS DB by Nucleotide ID:NM_001177588Re-query CCDS DB by Protein ID:NP_001171059Link to BLAST:NP_001171059.1

Chromosomal Locations for CCDS 57459.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 132361402 132362153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132363008 132363043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132364044 132364107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGCTGGTAATCCTGCTCACAGCGGCTTTGCTGGTCCTGAGCTCAGCTCAGAGAGAAGATGAAGAGATCA
CCTACGAAGACTCAAATTCTCAGCTCCTAGAGATGGGAGAGCAGAGCCAAGGGTATGGTCATCATTTTCC
AAAACCACCTCCTGGAGGAATGCCCCCAAGACCTCCCAGTTCTGATGAAAATGATGATGGTGATGAAGAT
GGCAGTGAGGAAGATGTGAATAGACCAGAGAGACCACCACAGCACCCTCCTCACTCAGGACACCACCATG
GACCTCCCCCACAGGGAGACGCACAGGGTCCCCCTAGGCCTGGAAACCAACAAGGCCCACCCCCTCCAGG
CCCACCACCACAGGGAAGCTCACAGCAGAGATCCCCTCAGCCTGGAAACCAACAAGGCCCACCTCCACAG
GGAGGCCCCCAGCAGAGACCCCCTCAGCCTGGAAATCAACAAGGTCCACCCCCACAGGGAGGCCCCCAAC
AGAGACCTCCTCAGCCTGGAAACCAACAAGGACCACCCCCACAGGGAGGCCCACAGGGACCTCCTAGGCC
TGGAAACCAGCAAGGCCCACCCCCGCAGGGAGGCCCCCAGCAGAGACCCACTCAGCCTGGAAACCAACAA
GGCCCACCCCAACAGGGAGGCCCTCAGGGACCTCCTAGGCCTGGAAACCAGCAAGGCCCACCCCCACAGG
GAGGCCCTCAGGGACCTCCTAGGCCTGGAAACCAACAAGGCCCACCCCCACAGGGAGGCCCTCAGAGACC
TCCTCAGCCAAGAAACCATCAAGGCCCACCTCAGCATGGAAACAATGAACAGCCAAGTTACCTGTGGTCA
CTTTTTGCATAA

Translation (283 aa):
MLVILLTAALLVLSSAQREDEEITYEDSNSQLLEMGEQSQGYGHHFPKPPPGGMPPRPPSSDENDDGDED
GSEEDVNRPERPPQHPPHSGHHHGPPPQGDAQGPPRPGNQQGPPPPGPPPQGSSQQRSPQPGNQQGPPPQ
GGPQQRPPQPGNQQGPPPQGGPQQRPPQPGNQQGPPPQGGPQGPPRPGNQQGPPPQGGPQQRPTQPGNQQ
GPPQQGGPQGPPRPGNQQGPPPQGGPQGPPRPGNQQGPPPQGGPQRPPQPRNHQGPPQHGNNEQPSYLWS
LFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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