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Report for CCDS40194.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40194.1 Public Mus musculus 7 Ascl2 23 108 98 CCDS HistoryNCBI Gene:17173Re-query CCDS DB by CCDS ID:40194.1Re-query CCDS DB by GeneID:17173See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40194.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009392.5 ENSMUSP00000009392.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009392.5Link to Ensembl Protein Viewer:ENSMUSP00000009392.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000009392Re-query CCDS DB by Protein ID:ENSMUSP00000009392
Original member Current member NCBI NM_008554.3 NP_032580.2 Accepted alive Link to Nucleotide Sequence:NM_008554.3Link to Protein Sequence:NP_032580.2Re-query CCDS DB by Nucleotide ID:NM_008554Re-query CCDS DB by Protein ID:NP_032580Link to BLAST:NP_032580.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032580.2 263 O35885 263 100% 0 0

Chromosomal Locations for CCDS 40194.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 142967918 142968699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142968971 142968980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (792 nt):
ATGGAAGCACACCTTGACTGGTACGGGGTCCCAGGACTGCAGGAGGCCAGCGACGCGTGCCCTAGGGAGT
CCTGCAGCAGTGCCCTGCCTGAGGCCCGTGAAGGTGCAAACGTCCACTTCCCACCGCACCCGGTTCCTCG
CGAGCACTTTTCCTGTGCCGCACCAGAACTCGTAGCAGGGGCCCAGGGGCTGAATGCAAGCTTGATGGAC
GGCGGCGCGCTGCCCAGACTCATGCCCACCTCGTCTGGAGTCGCTGGAGCCTGCGCTGCTCGGCGGAGAC
AAGCGTCTCCGGAATTGCTGCGCTGCAGCCGGCGGCGGCGATCTGGAGCAACCGAGGCCAGCAGCAGCTC
GGCTGCCGTGGCACGCCGCAATGAGCGCGAGCGCAACCGCGTAAAGCTGGTAAACTTGGGCTTCCAGGCG
CTGCGGCAGCACGTGCCGCACGGCGGCGCCAACAAGAAGCTGAGTAAGGTGGAGACGCTGCGCTCCGCGG
TAGAGTACATTCGTGCGCTGCAGCGGCTGCTCGCAGAGCACGACGCGGTGCGTGCCGCGCTCGCTGGGGG
GCTGTTAACACCCGCTACTCCGCCGTCCGATGAGTGCGCGCAGCCCTCTGCCTCCCCTGCCAGCGCGTCT
CTGTCCTGCGCCTCTACGTCTCCGTCCCCGGACCGCCTGGGCTGCTCTGAGCCTACCTCCCCGCGCTCCG
CCTACTCGTCGGAGGAAAGCAGCTGCGAGGGAGAGCTAAGCCCGATGGAGCAGGAGCTGCTTGACTTTTC
CAGTTGGTTAGGGGGCTACTGA

Translation (263 aa):
MEAHLDWYGVPGLQEASDACPRESCSSALPEAREGANVHFPPHPVPREHFSCAAPELVAGAQGLNASLMD
GGALPRLMPTSSGVAGACAARRRQASPELLRCSRRRRSGATEASSSSAAVARRNERERNRVKLVNLGFQA
LRQHVPHGGANKKLSKVETLRSAVEYIRALQRLLAEHDAVRAALAGGLLTPATPPSDECAQPSASPASAS
LSCASTSPSPDRLGCSEPTSPRSAYSSEESSCEGELSPMEQELLDFSSWLGGY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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