NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24162.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24162.1 Public Mus musculus 10 Myf6 23 108 98 CCDS HistoryNCBI Gene:17878Re-query CCDS DB by CCDS ID:24162.1Re-query CCDS DB by GeneID:17878See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24162.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044210.4 ENSMUSP00000047529.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044210.4Link to Ensembl Protein Viewer:ENSMUSP00000047529.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000044210Re-query CCDS DB by Protein ID:ENSMUSP00000047529
Original member Current member NCBI NM_008657.3 NP_032683.1 Accepted alive Link to Nucleotide Sequence:NM_008657.3Link to Protein Sequence:NP_032683.1Re-query CCDS DB by Nucleotide ID:NM_008657Re-query CCDS DB by Protein ID:NP_032683Link to BLAST:NP_032683.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032683.1 242 P15375 242 100% 0 0

Chromosomal Locations for CCDS 24162.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 107493354 107493472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 107493811 107493901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 107494186 107494704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGATGATGGACCTTTTTGAAACTGGCTCCTATTTCTTCTACTTAGATGGAGAAAATGTGACTCTTCAGC
CATTAGAAGTGGCAGAGGGCTCTCCTTTGTATCCAGGGAGTGATGGTACCCTATCCCCTTGCCAGGACCA
AATGCCCCAGGAAGCCGGGAGCGACAGCAGTGGAGAGGAACACGTTCTGGCTCCCCCAGGCCTGCAGCCT
CCCCACTGCCCTGGCCAGTGTCTGATCTGGGCTTGCAAGACTTGCAAGAGAAAATCTGCCCCCACAGATC
GTCGGAAAGCAGCTACCCTGCGCGAAAGGAGGAGACTAAAGAAAATCAACGAAGCCTTTGAGGCCCTGAA
GCGTCGGACTGTGGCCAACCCCAACCAGAGACTGCCCAAGGTGGAGATTCTGCGGAGTGCCATCAGCTAC
ATTGAGCGTCTACAGGACCTGCTGCACCGGCTGGATCAGCAAGAGAAGATGCAGGAGCTGGGCGTGGACC
CCTACAGCTACAAACCCAAGCAAGAAATTCTTGAGGGTGCGGATTTCCTGCGCACCTGCAGCCCCCAGTG
GCCAAGTGTTTCGGATCATTCCAGGGGCCTCGTGATAACTGCTAAGGAAGGAGGAGCAAACGTGGATGCC
TCAGCCTCCAGCAGTCTTCAGCGCCTTTCTTCCATCGTGGACAGTATTTCTTCAGAGGAACGCAAACTCC
CCAGCGTGGAGGAGGTGGTGGAGAAGTAA

Translation (242 aa):
MMMDLFETGSYFFYLDGENVTLQPLEVAEGSPLYPGSDGTLSPCQDQMPQEAGSDSSGEEHVLAPPGLQP
PHCPGQCLIWACKTCKRKSAPTDRRKAATLRERRRLKKINEAFEALKRRTVANPNQRLPKVEILRSAISY
IERLQDLLHRLDQQEKMQELGVDPYSYKPKQEILEGADFLRTCSPQWPSVSDHSRGLVITAKEGGANVDA
SASSSLQRLSSIVDSISSEERKLPSVEEVVEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH