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Report for CCDS22036.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22036.1 Public Mus musculus 7 Th 23 108 98 CCDS HistoryNCBI Gene:21823Re-query CCDS DB by CCDS ID:22036.1Re-query CCDS DB by GeneID:21823See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22036.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000219.9 ENSMUSP00000000219.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000219.9Link to Ensembl Protein Viewer:ENSMUSP00000000219.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000000219Re-query CCDS DB by Protein ID:ENSMUSP00000000219
Original member Current member NCBI NM_009377.2 NP_033403.1 Accepted alive Link to Nucleotide Sequence:NM_009377.2Link to Protein Sequence:NP_033403.1Re-query CCDS DB by Nucleotide ID:NM_009377Re-query CCDS DB by Protein ID:NP_033403Link to BLAST:NP_033403.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033403.1 498 P24529 498 100% 0 0

Chromosomal Locations for CCDS 22036.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 142893031 142893190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142894008 142894141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142894393 142894488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142894641 142894697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142895089 142895158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142895317 142895452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142895523 142895668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142896029 142896079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142896411 142896478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142896594 142896682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142896928 142897102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142897966 142898190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142899872 142899961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1497 nt):
ATGCCCACCCCCAGCGCCTCCTCGCCACAGCCCAAGGGCTTCAGAAGAGCCGTCTCAGAGCAGGATACCA
AGCAGGCCGAGGCTGTCACGTCCCCAAGGTTCATTGGACGGCGGCAGAGTCTCATCGAGGATGCCCGCAA
GGAGCGGGAGGCAGCAGCAGCTGCAGCAGCGGCTGCGGTAGCCTCCGCGGAACCTGGGAACCCATTGGAG
GCTGTGGTATTCGAGGAGAGGGATGGAAATGCTGTTCTCAACCTGCTCTTCTCCTTGAGGGGTACAAAAC
CCTCCTCACTGTCTCGGGCTTTGAAAGTGTTTGAGACATTTGAAGCCAAAATCCACCACTTAGAGACCCG
GCCTGCCCAGAGGCCACTGGCAGGAAGCCCCCACCTGGAGTACTTTGTGCGCTTCGAGGTGCCCAGTGGC
GACCTGGCTGCCCTCCTCAGTTCTGTGCGTCGGGTGTCTGACGATGTGCGCAGTGCCAGAGAGGACAAGG
TTCCCTGGTTCCCAAGGAAAGTGTCAGAGTTGGATAAGTGTCACCACCTGGTCACCAAGTTTGACCCTGA
CCTGGACCTGGACCATCCGGGCTTCTCTGACCAGGCGTATCGCCAGCGCCGGAAGCTGATTGCAGAGATT
GCCTTCCAATACAAGCAGGGTGAGCCAATTCCCCACGTGGAATACACAAAGGAGGAAATTGCTACCTGGA
AGGAGGTATACGCCACGCTGAAGGGCCTCTATGCTACCCATGCCTGCCGGGAACACCTGGAGGCTTTCCA
GCTTCTGGAACGGTACTGTGGCTACCGAGAGGACAGCATTCCACAGCTGGAGGATGTGTCTCACTTCTTG
AAGGAACGGACTGGCTTCCAGCTGCGACCCGTGGCCGGTCTACTGTCTGCCCGTGATTTTCTGGCCAGTC
TGGCCTTCCGTGTGTTTCAGTGCACACAGTACATCCGTCATGCCTCCTCACCTATGCACTCACCCGAGCC
AGACTGCTGCCACGAGCTGCTGGGACACGTACCCATGTTGGCTGACCGCACATTTGCCCAGTTCTCCCAG
GACATTGGACTTGCATCTCTGGGGGCTTCAGATGAAGAAATTGAAAAACTCTCCACGGTGTACTGGTTCA
CTGTGGAGTTTGGGCTGTGTAAACAGAATGGGGAGCTGAAGGCTTACGGTGCAGGGCTGCTGTCTTCCTA
TGGAGAGCTCCTGCACTCCCTGTCAGAGGAGCCCGAGGTCCGGGCCTTTGACCCAGACACAGCAGCCGTG
CAGCCCTACCAAGATCAAACCTACCAGCCGGTGTACTTCGTGTCAGAGAGCTTCAGTGATGCCAAGGACA
AGCTCAGGAACTATGCCTCTCGTATCCAGCGCCCATTCTCTGTGAAGTTTGACCCGTACACCCTGGCCAT
TGATGTACTGGACAGTCCTCACACCATCCGGCGCTCCTTAGAGGGGGTCCAGGATGAGCTGCACACCCTG
ACCCAAGCACTGAGTGCCATTAGCTAA

Translation (498 aa):
MPTPSASSPQPKGFRRAVSEQDTKQAEAVTSPRFIGRRQSLIEDARKEREAAAAAAAAAVASAEPGNPLE
AVVFEERDGNAVLNLLFSLRGTKPSSLSRALKVFETFEAKIHHLETRPAQRPLAGSPHLEYFVRFEVPSG
DLAALLSSVRRVSDDVRSAREDKVPWFPRKVSELDKCHHLVTKFDPDLDLDHPGFSDQAYRQRRKLIAEI
AFQYKQGEPIPHVEYTKEEIATWKEVYATLKGLYATHACREHLEAFQLLERYCGYREDSIPQLEDVSHFL
KERTGFQLRPVAGLLSARDFLASLAFRVFQCTQYIRHASSPMHSPEPDCCHELLGHVPMLADRTFAQFSQ
DIGLASLGASDEEIEKLSTVYWFTVEFGLCKQNGELKAYGAGLLSSYGELLHSLSEEPEVRAFDPDTAAV
QPYQDQTYQPVYFVSESFSDAKDKLRNYASRIQRPFSVKFDPYTLAIDVLDSPHTIRRSLEGVQDELHTL
TQALSAIS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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