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Report for CCDS27411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27411.1 Public Mus musculus 15 Cct5 23 108 98 CCDS HistoryNCBI Gene:12465Re-query CCDS DB by CCDS ID:27411.1Re-query CCDS DB by GeneID:12465See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27411.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022842.15 ENSMUSP00000022842.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022842.15Link to Ensembl Protein Viewer:ENSMUSP00000022842.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022842Re-query CCDS DB by Protein ID:ENSMUSP00000022842
Original member Current member NCBI NM_007637.3 NP_031663.1 Accepted alive Link to Nucleotide Sequence:NM_007637.3Link to Protein Sequence:NP_031663.1Re-query CCDS DB by Nucleotide ID:NM_007637Re-query CCDS DB by Protein ID:NP_031663Link to BLAST:NP_031663.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031663.1 541 P80316 541 100% 0 0

Chromosomal Locations for CCDS 27411.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 31590928 31591055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 31592285 31592465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 31592646 31592783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 31592867 31593052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 31593515 31593634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 31594097 31594246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 31594334 31594526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 31595645 31595843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 31597411 31597575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 31598000 31598060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 31601601 31601705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGGCGTCCGTGGGGACCCTCGCCTTCGATGAGTATGGGCGCCCCTTTCTCATTATCAAGGACCAAGATC
GCAAGTCCCGTCTCATGGGGCTTGAGGCCCTCAAGTCTCACATCATGGCTGCCAAAGCTGTAGCAAACAC
AATGCGGACGTCACTGGGACCAAACGGGCTGGACAAGATGATGGTTGATAAGGATGGCGATGTGACTATA
ACAAACGATGGTGCCACCATTCTAAGCATGATGGATGTCGATCATCAGATTGCCAAGCTGATGGTTGAAC
TGTCCAAATCCCAGGATGATGAAATTGGAGATGGGACCACAGGAGTGGTTGTCTTGGCTGGGGCCTTGTT
GGAAGAAGCTGAACAGCTGCTGGACCGAGGCATCCACCCAATCAGAATTGCTGATGGCTACGAGCAGGCT
GCCCGAATTGCAATACAACACCTGGACAAGATCAGCGATAAAGTGCTTGTCGACATAAACAACCCTGAAC
CTCTGATTCAGACTGCAAAAACCACGCTGGGCTCCAAAGTGATTAACAGCTGTCACCGACAGATGGCTGA
GATCGCCGTGAATGCCGTCCTCACGGTGGCAGATATGGAGCGGAGAGATGTTGACTTTGAGCTCATTAAA
GTGGAAGGCAAAGTAGGTGGGCGGCTGGAAGACACCAAGCTCATAAAGGGTGTGATCGTTGACAAGGACT
TCAGCCACCCACAGATGCCGAAAAAAGTGGTAGATGCTAAGATTGCGATTCTCACGTGTCCATTTGAGCC
ACCTAAACCTAAGACAAAGCACAAGCTGGATGTCATGTCTGTGGAGGACTACAAAGCCCTGCAGAAGTAC
GAAAAGGAGAAGTTTGAAGAGATGATTAAGCAGATTAAAGAAACTGGTGCTAACCTAGCTATTTGCCAGT
GGGGCTTTGACGATGAAGCCAATCACTTACTTCTTCAGAACGGCCTACCTGCAGTCCGCTGGGTAGGGGG
ACCTGAGATTGAGCTGATCGCCATTGCAACAGGAGGACGGATTGTCCCACGGTTCTCAGAGCTCACCTCT
GAGAAGCTGGGCTTTGCTGGTGTGGTGCAGGAGATCTCCTTTGGCACTACAAAAGACAAAATGCTGGTTA
TCGAGAAGTGTAAGAACTCTAGAGCTGTGACCATTTTCATCAGAGGAGGAAACAAGATGATCATAGAAGA
AGCAAAACGATCTCTCCATGATGCCCTGTGTGTCATCCGGAACCTCATCCGTGACAACCGTGTTGTGTAT
GGAGGAGGGGCAGCCGAAATATCCTGCGCCCTGGCAGTCAGCCAAGAGGCAGACAAGTGCCCAACTTTGG
AACAGTATGCCATGAGAGCTTTTGCAGATGCCTTGGAGGTCATCCCCATGGCCCTTTCAGAAAATAGTGG
CATGAATCCCATTCAGACCATGACTGAAGTTCGAGCCAGACAGGTGAAGGAGTCTAACCCTGCCCTGGGG
ATTGACTGTTTGCACAAGGGCAGTAACGATATGCAGTATCAGCATGTCATAGAAACCTTGATTGGCAAAA
AGCAGCAGATCTCTCTTGCCACCCAGATGGTTAGGATGATTCTGAAGATTGATGACATCCGTAAGCCTGG
AGAATCTGAAGAATAA

Translation (541 aa):
MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTI
TNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQA
ARIAIQHLDKISDKVLVDINNPEPLIQTAKTTLGSKVINSCHRQMAEIAVNAVLTVADMERRDVDFELIK
VEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVVDAKIAILTCPFEPPKPKTKHKLDVMSVEDYKALQKY
EKEKFEEMIKQIKETGANLAICQWGFDDEANHLLLQNGLPAVRWVGGPEIELIAIATGGRIVPRFSELTS
EKLGFAGVVQEISFGTTKDKMLVIEKCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVY
GGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKESNPALG
IDCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGESEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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