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Report for CCDS39330.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39330.1 Public Mus musculus 5 Ap1s1 23 108 98 CCDS HistoryNCBI Gene:11769Re-query CCDS DB by CCDS ID:39330.1Re-query CCDS DB by GeneID:11769See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39330.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111080.7 ENSMUSP00000106709.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111080.7Link to Ensembl Protein Viewer:ENSMUSP00000106709.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111080Re-query CCDS DB by Protein ID:ENSMUSP00000106709
Original member NCBI NM_007457.3 NP_031483.1 Updated not alive Link to Nucleotide Sequence:NM_007457.3Link to Protein Sequence:NP_031483.1Re-query CCDS DB by Nucleotide ID:NM_007457Re-query CCDS DB by Protein ID:NP_031483
Current member NCBI NM_007457.4 NP_031483.1 Accepted alive Link to Nucleotide Sequence:NM_007457.4Link to Protein Sequence:NP_031483.1Re-query CCDS DB by Nucleotide ID:NM_007457Re-query CCDS DB by Protein ID:NP_031483Link to BLAST:NP_031483.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031483.1 158 P61967 158 100% 0 0

Chromosomal Locations for CCDS 39330.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137035744 137035791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137037418 137037555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137041769 137041877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137043064 137043242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137046008 137046010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGATGCGATTCATGCTACTGTTCAGCCGGCAGGGAAAACTTCGGCTACAAAAATGGTACCTGGCCACCT
CAGACAAGGAGAGGAAGAAGATGGTCCGAGAGCTCATGCAAGTCGTCCTGGCTAGAAAGCCCAAAATGTG
CAGCTTCCTGGAGTGGAGGGACCTCAAAGTTGTCTATAAGAGATACGCCAGTCTCTATTTCTGCTGCGCC
ATCGAAGGCCAAGACAACGAGCTGATCACACTGGAGCTGATCCACCGATACGTAGAGCTCTTGGACAAGT
ACTTCGGCAGCGTATGTGAGTTGGACATCATCTTCAACTTTGAGAAAGCCTACTTTATCCTGGACGAGTT
TCTGATGGGTGGGGATGTCCAGGACACCTCCAAGAAGAGTGTGCTCAAGGCCATTGAGCAGGCTGACCTG
CTGCAGGAGGAGGATGAGTCGCCGCGCAGTGTCCTGGAGGAGATGGGCCTGGCATAG

Translation (158 aa):
MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCA
IEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADL
LQEEDESPRSVLEEMGLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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