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Report for CCDS32549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32549.1 Public Homo sapiens 17 SOX15 24 110 108 CCDS HistoryNCBI Gene:6665Re-query CCDS DB by CCDS ID:32549.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32549.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000250055.3 ENSP00000355354.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000250055.3Link to Ensembl Protein Viewer:ENSP00000355354.2Re-query CCDS DB by Nucleotide ID:ENST00000250055Re-query CCDS DB by Protein ID:ENSP00000355354
Original member Current member EBI ENST00000538513.6 ENSP00000439311.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538513.6Link to Ensembl Protein Viewer:ENSP00000439311.2Re-query CCDS DB by Nucleotide ID:ENST00000538513Re-query CCDS DB by Protein ID:ENSP00000439311
Original member Current member NCBI NM_006942.2 NP_008873.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006942.2Link to Protein Sequence:NP_008873.1Re-query CCDS DB by Nucleotide ID:NM_006942Re-query CCDS DB by Protein ID:NP_008873Link to BLAST:NP_008873.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008873.1 233 O60248-1 233 100% 0 0

Chromosomal Locations for CCDS 32549.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 7588378 7588546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7589144 7589676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGGCGCTACCAGGCTCCTCACAGGACCAGGCCTGGAGCCTGGAGCCTCCGGCTGCCACGGCTGCTGCCT
CCTCATCTTCGGGACCCCAGGAGCGGGAGGGCGCTGGGAGCCCCGCGGCCCCCGGGACGCTGCCCCTGGA
GAAGGTGAAGCGGCCGATGAACGCGTTCATGGTGTGGAGCTCCGCTCAGCGCCGCCAGATGGCGCAGCAG
AACCCCAAGATGCACAACTCCGAGATCTCCAAGCGCCTGGGCGCGCAGTGGAAGCTGCTGGACGAGGACG
AGAAGCGGCCCTTCGTGGAGGAGGCCAAGCGGCTCCGCGCCCGACACCTGCGCGACTACCCCGACTACAA
GTACCGGCCTCGGCGCAAGGCCAAGAGCTCGGGCGCCGGACCTTCCCGCTGCGGACAGGGAAGAGGCAAC
CTGGCCAGCGGCGGCCCGCTCTGGGGGCCGGGGTACGCGACCACCCAACCGAGCAGAGGCTTTGGGTACA
GACCCCCCAGCTACTCGACAGCCTACCTGCCTGGCAGCTATGGCTCTTCCCACTGCAAACTGGAAGCCCC
CTCACCGTGCTCCCTCCCTCAGAGTGACCCTAGGCTCCAGGGGGAACTGCTGCCCACCTATACCCACTAC
CTGCCCCCTGGCTCTCCCACTCCATACAACCCTCCCCTTGCTGGTGCCCCCATGCCCCTAACCCACCTCT
AA

Translation (233 aa):
MALPGSSQDQAWSLEPPAATAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWSSAQRRQMAQQ
NPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRKAKSSGAGPSRCGQGRGN
LASGGPLWGPGYATTQPSRGFGYRPPSYSTAYLPGSYGSSHCKLEAPSPCSLPQSDPRLQGELLPTYTHY
LPPGSPTPYNPPLAGAPMPLTHL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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