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Report for CCDS75604.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75604.1 Public Homo sapiens 7 VSTM2A 24 110 108 CCDS HistoryNCBI Gene:222008Re-query CCDS DB by CCDS ID:75604.1Re-query CCDS DB by GeneID:222008See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75604.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000402613.4 ENSP00000384103.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000402613.4Link to Ensembl Protein Viewer:ENSP00000384103.3Re-query CCDS DB by Nucleotide ID:ENST00000402613Re-query CCDS DB by Protein ID:ENSP00000384103
Original member Current member NCBI NM_001301009.2 NP_001287938.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001301009.2Link to Protein Sequence:NP_001287938.1Re-query CCDS DB by Nucleotide ID:NM_001301009Re-query CCDS DB by Protein ID:NP_001287938Link to BLAST:NP_001287938.1

Chromosomal Locations for CCDS 75604.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 54542731 54542809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 54544622 54544788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 54546947 54546997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 54549834 54550170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 54569131 54569219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGATGGGGATCTTTTTGGTGTATGTTGGATTTGTTTTCTTTTCCGTTTTATATGTACAACAAGGGCTTT
CTTCTCAAGCAAAATTTACCGAGTTTCCGCGGAACGTGACGGCGACCGAGGGGCAGAATGTGGAGATGTC
CTGCGCCTTCCAGAGCGGCTCCGCCTCGGTGTATCTGGAGATCCAATGGTGGTTCCTGCGGGGGCCGGAG
GACCTGGATCCCGGGGCCGAGGGGGCCGGCGCGCAGGTGGAGCTCTTGCCCGACAGAGACCCGGACAGCG
ACGGGACCAAGATCAGCACAGTGAAAGTCCAAGGCAATGACATCTCCCACAAGCTTCAGATTTCCAAAGT
GAGGAAAAAGGATGAAGGCTTATATGAGTGCAGGGTGACTGATGCCAACTACGGGGAGCTTCAGGAACAC
AAGGCCCAGGCCTATCTGAAAGTCAATGCCAACAGCCATGCCCGCAGAATGCAGGCCTTCGAAGCCTCGC
CCATGTGGCTGCAGGATATGAAGCCCCGCAAGAACGTCTCCGCAGCCATCCCCAGCAGCATCCATGGCTC
TGCCAACCAACGAACGCACTCCACCTCCAGCCCTCAAGTGGTAGCCAAAATCCCCAAACAAAGTCCACAA
TCAGCAAAGAGCAAATCGCCTGTAAAATCTACGGAGCGGACAGCAAAGTTGACCCTAAACTCCAAGCACC
ACCCTGCACCCACTGTACTCTAA

Translation (240 aa):
MMGIFLVYVGFVFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLEIQWWFLRGPE
DLDPGAEGAGAQVELLPDRDPDSDGTKISTVKVQGNDISHKLQISKVRKKDEGLYECRVTDANYGELQEH
KAQAYLKVNANSHARRMQAFEASPMWLQDMKPRKNVSAAIPSSIHGSANQRTHSTSSPQVVAKIPKQSPQ
SAKSKSPVKSTERTAKLTLNSKHHPAPTVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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