NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28833.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28833.1 Public Mus musculus 17 Cul7 23 108 98 CCDS HistoryNCBI Gene:66515Re-query CCDS DB by CCDS ID:28833.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28833.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043464.13 ENSMUSP00000049128.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043464.13Link to Ensembl Protein Viewer:ENSMUSP00000049128.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000043464Re-query CCDS DB by Protein ID:ENSMUSP00000049128
Original member Current member NCBI NM_025611.5 NP_079887.3 Accepted alive Link to Nucleotide Sequence:NM_025611.5Link to Protein Sequence:NP_079887.3Re-query CCDS DB by Nucleotide ID:NM_025611Re-query CCDS DB by Protein ID:NP_079887Link to BLAST:NP_079887.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079887.3 1689 Q8VE73-1 1689 100% 0 0

Chromosomal Locations for CCDS 28833.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46651445 46652018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46652460 46652611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46652725 46653198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46653750 46653888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46653986 46654182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46654434 46654659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46655515 46655752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46655844 46655949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46656994 46657221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46657444 46657534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46657632 46657803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46657928 46658033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46658322 46658417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46658608 46658783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46659062 46659195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46659467 46659649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46659863 46659969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46660059 46660241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46661294 46661454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46661636 46661852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46661925 46662231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46663058 46663203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46663322 46663448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46663538 46663743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46663968 46664291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5070 nt):
ATGGTAGGGGAGCTACGATACAGGGAATTCAGGGTGCCCCTGGGGCCTGGCTTGCACGCGTATCCGGATG
AATTGATCCGCCAACGGGTTGGCCATAATGGGCACCCCGAGTATCAGATCCGCTGGCTCATCCTCAGGCG
CGGGGATGATGGGGACCGGGACTCTACAGTGGACTGCAAGGCTGAGCATATCCTGTTATGGATGTCTGAC
GATGAGATCTATGCCAACTGCCACAAGATGCTGGGCGAGAATGGCCAAGTCATCGCACCTTCCCGGGAGT
CCACTGAGGCAGGGGCCCTCGACAAGTCTGTGCTGGGGGAGATGGAAACAGATGTGAAGTCCTTGATTCA
GAGGGCCCTTCGGCAGCTGGAGGAGTGCGTGGGCACCGTGCCTCCTGCCCCTCTCCTTCACACGGTCCAT
GTACTCAGTGCCTATGCCAGCATCGAGCCCCTCACTGGCATCTTCAAAGACCGCAGGGTTGTGAACTTGC
TCATGCACATGTTGAGCAGTCCTGATTATCAGATCCGCTGGAGCGCAGGCCGGATGATCCAAGCTCTGTC
CTCCCACGATGCTGGGACCCGGACCCAGATCCTTCTGTCATTGAGCCAACAAGAGGCCATTGAAAAGCAC
CTGGATTTTGATAGCCGCTGCGCTCTGCTTGCACTGTTCGCCCAGGCTACTCTCACGGAACACCCGATGT
CTTTCGAGGGCGTTCAGCTGCCACAGGTCCCAGGACGGCTGCTCTTCTCCCTGGTAAAACGCTACCTGCA
CGTCACCTTCCTCCTGGATCGGCTGAACGGCGATGCAGGGGATCAAGGAGCCCAGAACAACTTTATTCCT
GAGGAGTTGAATGTAGGGAGGGGCCGGCTGGAACTGGAATTCAGTATGGCCATGGGCACTCTGATCTCTG
AGCTGGTGCAGGCCATGCGCTGGGACGGGGCCTCAAGCAGACCAGAGAGTTCTTCCTCCTCCACCTTCCA
GCCTCGGCCAGCACAGTTCCGCCCCTACACCCAGCGTTTCAGGAGGTCGAGGCGGTTTCGCCCCCGTGCC
TCGTTTGCCAGTTTTAATACCTATGCCTTGTATGTGCGGGACACGCTGCGGCCCGGGATGCGGGTACGGA
TGCTGGAGAATTACGAGGAGATCGCTGCTGGGGATGAGGGCCAGTTCCGACAGAGCAATGATGGCGTTCC
CCCAGCGCAGGTGTTGTGGGATTCAACAGGCCATACCTACTGGGTGCACTGGCACATGCTGGAGATCTTG
GGCTTTGAGGAAGACATCGAGGATGTGATTGATATTGAAGAGTTACAGGAGCTAGGGGCCAATGGAGCAC
TGAGCATCGTCCCGCCGTCCCAGCGCTGGAAGCCCATAACTCAGCTCTTTGCCGAGCCTTACGTGGTACC
CGAGGAGGAAGACAGGGAAGAGAGCGAGAACTTGACCCAGGCTGAGTGGTGGGAGCTCCTCTTCTTCATC
CGGCAGTTGAGTGAGGCAGAGCGCCTTCACATCGTGGATCTCCTGCAAGACCACCTGGAAGAGGAGCGCG
TTCTGGACTACGATATGCTGCCTGAGCTGACCGTGCCCGTTGACTTGGCCCAGGATCTGCTGTTGTCTCT
GCCTCAGCAACTTGAGGACAGTGCTCTGAGGGACCTGTTCAGCTGCAGTGTCTACAGGAAGTATGGGCCC
GAAGTCCTGGTAGGGCATCTAAGCTACCCATTTGTGCCAGGTGCCCAGCCAAATTTATTCGGAGCCAATG
AAGAGTCTGAAGCCAAAGATCCCCCACTTCAGAGTGCCAGCCCTGCCCTGCAGCGCCTGGTGGAGAGCTT
GGGCCCCGAAGGGGAGGTCCTTGTGGAACTGGAACAAGCCCTCGGCTCCGAGGCTCCCCAGGAAACTGAG
GTCAAGTCCTGCTTGTTGCAGCTCCAGGAGCAGCCCCAGCCCTTCCTCGCTCTGATGCGGAGCCTGGACA
CTTCCGCCAGCAACAAGACCCTGCACCTCACTGTGCTCAGAATCTTAATGCAGCTGGTGAACTTCCCAGA
GGCGCTGTTGCTACCCTGGCACGAGGCCATGGATGCCTGCGTGACCTGCCTTCGGTCCCCCAATACTGAC
CGAGAGGTGCTCCAGGAACTAATCTTTTTCCTGCACCGCCTGACCACCACAAGCCGGGACTATGCGGTGA
TACTAAACCAGCTAGGAGCCCGGGACGCCATCTCCAAAGTCCTGGAAAAGCACCGAGGGAAACTGGAGTT
GGCTCAGGAGCTGCGGGATATGGTGTCCAAGTGTGAGAAGCATGCCCACCTCTACCGGAAACTCACCACC
AACATCCTGGGCGGTTGCATCCAGATGGTCCTGGGTCAGATTGAAGACCACAGACGAACCCACCGGCCCA
TCCAAATCCCATTCTTTGATGTGTTTCTCAGATATCTGTGCCAGGGCTCCAGTGAGGAAATGAAGAAAAA
CAGGTACTGGGAGAAGGTGGAGGTGTCCTCCAACCCACAGCGGGCCAGCAGGCTGACGGACCGCAACCCC
AAGACCTACTGGGAGTCCAGTGGCAGGGCCGGCTCCCACTTCATCACCTTACACATGCGCCCAGGTGTCA
TCATCAGGCAGCTGACTCTACTGGTGGCTGGCGAGGACTCAAGCTACATGCCAGCCTGGGTGGTGGTATG
CGGGGGCAACAGCATCAAGTCCGTTAATAAAGAACTCAACACGGTAAACGTGATGCCCTCTGCCAGCCGG
GTGACCCTCCTGGAGAACCTGACCCGCTTCTGGCCCATCATCCAAATCAGAATAAAGCGCTGCCAGCAGG
GTGGCATTAACACGCGCATCCGGGGCCTAGAGGTGCTGGGCCCCAAGCCCACCTTCTGGCCAGTGTTCCG
AGAGCAACTGTGCCGGCACACGCGCCTCTTCTACATGGTTCGGGCCCAGGCATGGAGTCAGGACATAGCA
GAGGACCGCCGGAGCCTTCTGCACCTGAGTTCTAGGCTAAATGGGGCTCTGCGCCATGAACAGAATTTTG
CAGAGCGCTTCCTTCCTGATATGGAGGCCGCCCAAGCACTGAGCAAGACCTGCTGGGAGGCGCTGGTCAG
CCCCCTGGTGCAGAACATTACATCTCCCGATGAGGACAGCACCAGCTCCTTGGGCTGGCTGCTGGATCAG
TACTTGGGATGCAGGGAGGCTGCCTACAATCCCCAGAGCAGGGCTGCTGCTTTCTCCTCCCGGGTTCGCC
GCCTTACCCACCTCCTGGTCCATGTGGAGCCCCGTGAGGCAGCACCTCCGGTGGTGGCCATCCCTCGATC
CAAGGGCAGGAACAGAATCCATGACTGGAGCTACTTGATCACCCGGGGCCTTCCAAGTAGCATCATGAAG
AACCTGACCCGCTGTTGGCGGTCTGTGGTGGAGGAGCAGATGAACAAGTTTCTGACTGCGTCCTGGAAAG
ACGATGATTTCGTACCCCGCTATTGCGAGCGCTATTACGTCCTGCAGAAGTCCAGCTCAGAGCTGTTTGG
GCCACGAGCTGCCTTCTTGCTGGCAATGCGGAATGGCTGTGCTGATGCTGTGCTGAGGCTCCCTTTCCTC
AGGGCCGCCCATGTGAGCGAGCAGTTTGCTCGGCACATTGACCAGAGGATCCAAGGCAGTAGGATGGGTG
GAGCCCGGGGAATGGAGATGCTGGCACAGTTGCAGCGATGCCTGGAGTCTGTCCTGATTTTCTCTCCCCT
GGAGATAGCCACCACCTTTGAGCATTACTACCAGCACTACATGGCTGACCGTCTCCTGAGCGTAGGCTCC
AGCTGGCTGGAGGGGGCCGTACTGGAGCAGATCGGTCCCTGCTTCCCCAGCCGTCTTCCCCAGCAGATGC
TACAGAGCCTGAACGTCTCAGAGGAGTTGCAGCGTCAGTTCCACGTTTACCAGCTGCAGCAGCTTGATCA
GGAGCTCCTGAAGCTGGAAGACACGGAAAAGAAGATACAGGTGGCCCATGAGGACAGTGGCAGAGAGGAC
AAGAGCAAGAAGGAAGAAGCCATTGGAGAAGCCGCGGCTGTGGCTATGGCAGAGGAGGAGGATCAAGGGA
AGAAGGAGGAGGGAGAGGAGGAAGGGGAGGGAGAGGATGAGGAGGAAGAGCGCTATTATAAAGGAACAAT
GCCAGAAGTGTGTGTACTTGTCGTGACGCCACGCTTCTGGCCTGTCGCCTCCGTCTGCCAAATGCTCAAC
CCGGCAACGTGCCTGCCCGCATACCTGCGGGGGACCATAAACCACTACACCAACTTTTACAGCAAGAGTC
AGAGCCGCTCCAGCTTAGAGAAAGAGCCACAGAGGCGGCTGCAGTGGACCTGGCAGGGCCGGGCAGAAGT
GCAGTTCGGGGGTCAGATTCTGCATGTGTCCACAGTACAGATGTGGCTGCTGCTGCATCTCAACAACCAA
AAGGAGGTGTCTGTCGAGAGCCTGCAGGCTATCTCGGAGCTCCCTCCAGATGTGCTTCACAGGGCCATCG
GGCCTCTCACCTCATCAAGAGGTCCCTTGGACCTGCAGGAGCAGAAGAACGTACCAGGAGGGGTGCTCAA
GATTCGAGATGACAGTGAGGAACCCAGGCCGAGGAGGGGCAACGTGTGGCTGATCCCACCTCAGACATAC
CTACAAGCTGAGGCCGAAGAGGGCCGGAACATGGAGAAGAGAAGGAATCTTCTGAATTGCCTTGTTGTCC
GAATCCTCAAGGCTCACGGGGATGAAGGCTTGCATGTTGACCGGCTCGTCTATCTGGTGCTAGAAGCGTG
GGAGAAAGGCCCGTGTCCTGCTAGGGGTCTGGTCAGCAGCCTCGGCAGGGGAGCAACCTGCAGGAGCTCT
GATGTCCTCTCCTGCATCCTGCACCTCCTGGTCAAGGGCACGCTGAGACGCCATGACGACCGGCCGCAGG
TGCTGTACTATGCAGTTCCTGTAACTGTGATGGAGCCCCACATGGAGTCCCTGAACCCTGGCTCGGCAGG
CCCCAATCCACCCCTCACCTTCCACACCCTGCAGATTCGATCCCGGGGTGTGCCTTACGCCTCCTGCACT
GATAACCACACCTTCTCCACTTTCCGGTAG

Translation (1689 aa):
MVGELRYREFRVPLGPGLHAYPDELIRQRVGHNGHPEYQIRWLILRRGDDGDRDSTVDCKAEHILLWMSD
DEIYANCHKMLGENGQVIAPSRESTEAGALDKSVLGEMETDVKSLIQRALRQLEECVGTVPPAPLLHTVH
VLSAYASIEPLTGIFKDRRVVNLLMHMLSSPDYQIRWSAGRMIQALSSHDAGTRTQILLSLSQQEAIEKH
LDFDSRCALLALFAQATLTEHPMSFEGVQLPQVPGRLLFSLVKRYLHVTFLLDRLNGDAGDQGAQNNFIP
EELNVGRGRLELEFSMAMGTLISELVQAMRWDGASSRPESSSSSTFQPRPAQFRPYTQRFRRSRRFRPRA
SFASFNTYALYVRDTLRPGMRVRMLENYEEIAAGDEGQFRQSNDGVPPAQVLWDSTGHTYWVHWHMLEIL
GFEEDIEDVIDIEELQELGANGALSIVPPSQRWKPITQLFAEPYVVPEEEDREESENLTQAEWWELLFFI
RQLSEAERLHIVDLLQDHLEEERVLDYDMLPELTVPVDLAQDLLLSLPQQLEDSALRDLFSCSVYRKYGP
EVLVGHLSYPFVPGAQPNLFGANEESEAKDPPLQSASPALQRLVESLGPEGEVLVELEQALGSEAPQETE
VKSCLLQLQEQPQPFLALMRSLDTSASNKTLHLTVLRILMQLVNFPEALLLPWHEAMDACVTCLRSPNTD
REVLQELIFFLHRLTTTSRDYAVILNQLGARDAISKVLEKHRGKLELAQELRDMVSKCEKHAHLYRKLTT
NILGGCIQMVLGQIEDHRRTHRPIQIPFFDVFLRYLCQGSSEEMKKNRYWEKVEVSSNPQRASRLTDRNP
KTYWESSGRAGSHFITLHMRPGVIIRQLTLLVAGEDSSYMPAWVVVCGGNSIKSVNKELNTVNVMPSASR
VTLLENLTRFWPIIQIRIKRCQQGGINTRIRGLEVLGPKPTFWPVFREQLCRHTRLFYMVRAQAWSQDIA
EDRRSLLHLSSRLNGALRHEQNFAERFLPDMEAAQALSKTCWEALVSPLVQNITSPDEDSTSSLGWLLDQ
YLGCREAAYNPQSRAAAFSSRVRRLTHLLVHVEPREAAPPVVAIPRSKGRNRIHDWSYLITRGLPSSIMK
NLTRCWRSVVEEQMNKFLTASWKDDDFVPRYCERYYVLQKSSSELFGPRAAFLLAMRNGCADAVLRLPFL
RAAHVSEQFARHIDQRIQGSRMGGARGMEMLAQLQRCLESVLIFSPLEIATTFEHYYQHYMADRLLSVGS
SWLEGAVLEQIGPCFPSRLPQQMLQSLNVSEELQRQFHVYQLQQLDQELLKLEDTEKKIQVAHEDSGRED
KSKKEEAIGEAAAVAMAEEEDQGKKEEGEEEGEGEDEEEERYYKGTMPEVCVLVVTPRFWPVASVCQMLN
PATCLPAYLRGTINHYTNFYSKSQSRSSLEKEPQRRLQWTWQGRAEVQFGGQILHVSTVQMWLLLHLNNQ
KEVSVESLQAISELPPDVLHRAIGPLTSSRGPLDLQEQKNVPGGVLKIRDDSEEPRPRRGNVWLIPPQTY
LQAEAEEGRNMEKRRNLLNCLVVRILKAHGDEGLHVDRLVYLVLEAWEKGPCPARGLVSSLGRGATCRSS
DVLSCILHLLVKGTLRRHDDRPQVLYYAVPVTVMEPHMESLNPGSAGPNPPLTFHTLQIRSRGVPYASCT
DNHTFSTFR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH