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Report for CCDS25564.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25564.1 Public Mus musculus 11 Smurf2 23 108 98 CCDS HistoryNCBI Gene:66313Re-query CCDS DB by CCDS ID:25564.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25564.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092517.8 ENSMUSP00000090177.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092517.8Link to Ensembl Protein Viewer:ENSMUSP00000090177.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000092517Re-query CCDS DB by Protein ID:ENSMUSP00000090177
Original member Current member EBI ENSMUST00000167787.1 ENSMUSP00000129269.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167787.1Link to Ensembl Protein Viewer:ENSMUSP00000129269.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167787Re-query CCDS DB by Protein ID:ENSMUSP00000129269
Original member Current member NCBI NM_025481.3 NP_079757.2 Accepted alive Link to Nucleotide Sequence:NM_025481.3Link to Protein Sequence:NP_079757.2Re-query CCDS DB by Nucleotide ID:NM_025481Re-query CCDS DB by Protein ID:NP_079757Link to BLAST:NP_079757.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079757.2 748 A2A5Z6-1 748 100% 0 0

Chromosomal Locations for CCDS 25564.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 106822665 106822764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106823020 106823095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106824609 106824810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106828504 106828624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106830920 106831057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106833745 106833923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106836070 106836184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106839188 106839291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106841600 106841795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106845983 106846141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106849748 106849832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106852447 106852649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106856181 106856264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106859712 106859796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106864712 106864777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106868535 106868668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106871502 106871610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106875901 106875939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 106920181 106920232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2247 nt):
ATGTCTAACCCCGGAGGCCGGAGGAACGGGCCCGTCAAGCTGCGCCTGACAGTACTCTGTGCAAAAAACT
TGGTGAAAAAGGATTTTTTCCGTCTTCCTGATCCATTTGCTAAGGTGGTAGTTGATGGTTCTGGGCAGTG
CCATTCTACAGATACTGTGAAGAACACACTTGATCCAAAGTGGAATCAGCATTATGACCTGTATATCGGA
AAGTCTGATTCAGTTACGATCAGCGTATGGAATCATAAGAAGATCCATAAGAAGCAAGGTGCTGGATTTC
TTGGTTGTGTTCGTCTTCTTTCCAATGCCATCAACCGCCTCAAGGACACTGGTTATCAGAGGTTGGATTT
ATGCAAACTGGGGCCAAATGACAATGATACAGTTCGAGGACAAATTGTAGTAAGTCTTCAGTCCAGAGAC
CGAATAGGCACGGGAGGACAAGTTGTGGACTGTAGTCGTTTGTTTGACAATGATTTGCCAGATGGTTGGG
AAGAAAGGCGGACTGCCTCGGGAAGAATCCAGTATCTAAACCACATCACAAGAACTACACAGTGGGAACG
CCCAACACGACCGGCGTCAGAATATTCTAGTCCTGGCAGACCCCTCAGCTGCTTTGTGGATGAGAATACT
CCAATTACTGGAACAAATGGTGCAACGTGTGGACATTCTTCAGACCCCAGACTAGCAGAGAGAAGAGTCA
GGTCCCAGCGACATAGAAATTACATGAGCAGGACACACTTACACACTCCTCCAGACCTACCGGAAGGCTA
TGAACAAAGGACAACGCAGCAGGGTCAGGTATATTTCTTACATACTCAGACTGGTGTGAGCACATGGCAT
GATCCACGAGTGCCTAGGGATCTTAGCAACATCAATTGTGAAGAGCTCGGTCCTTTGCCTCCTGGATGGG
AGATCCGCAATACCGCAACAGGAAGAGTTTATTTCGTTGACCATAACAACAGAACAACACAATTTACAGA
TCCCCGGCTCTCTGCTAACTTGCATTTAGTTTTAAATCGTCAGAACCAGTTGAAAGACCAACAGCAACAG
CAAGTGGTGCCATTGTGTCCCGATGACACTGAGTGTCTGACAGTGCCAAGATACAAGCGAGATTTGGTTC
AAAAACTAAAAATCTTGCGGCAAGAACTTTCCCAACAGCAGCCTCAAGCTGGCCACTGCCGTATTGAGGT
GTCTAGGGAAGAGATTTTTGAGGAATCATATAGACAGGTCATGAAAATGAGGCCAAAAGATCTATGGAAG
CGATTAATGATAAAATTTCGTGGAGAAGAAGGTCTTGACTATGGAGGAGTTGCCAGGGAATGGTTGTATC
TCCTGTCACATGAAATGTTGAATCCTTACTATGGTCTCTTCCAGTATTCTAGAGATGATATCTACACATT
GCAGATCAATCCTGATTCTGCAGTTAATCCGGAACATTTATCCTATTTCCACTTTGTTGGACGGATAATG
GGAATGGCTGTATTCCATGGACATTATATTGACGGTGGCTTCACATTACCTTTTTATAAACAGTTGCTTG
GGAAGTCAATTACTTTGGATGACATGGAGCTAGTTGACCCAGACCTTCATAATAGTTTAGTGTGGATACT
TGAAAACGATATCACAGGTGTTCTGGACCATACCTTCTGTGTTGAGCATAATGCATATGGTGAAATAATC
CAGCATGAACTCAAACCAAATGGCAAAAGTATCCCTGTTACTGAAGAAAATAAAAAAGAATATGTCAGGC
TTTATGTCAACTGGAGATTTCTCCGAGGCATCGAAGCTCAGTTCCTGGCGCTGCAGAAGGGCTTTAATGA
AGTCATTCCCCAGCACCTGCTGAAGACATTTGATGAGAAGGAGCTGGAGCTCATTATTTGTGGACTTGGC
AAAATTGATGTGAGTGACTGGAAGGTCAACACCCGGTTAAAACACTGTACCCCAGACAGCAATGTCGTCA
AGTGGTTCTGGAAAGCGGTGGAGTTTTTTGATGAAGAGAGACGAGCACGGTTGCTCCAGTTTGTGACAGG
GTCCTCTCGAGTGCCTCTGCAGGGCTTCAAAGCACTACAAGGTGCTGCAGGCCCACGGCTCTTTACCATA
CACCAGATTGATGCCTGCACGAACAACTTGCCAAAAGCCCACACTTGCTTCAATCGAATAGACATTCCAC
CCTATGAAAGCTATGAGAAGCTCTATGAAAAGCTGCTAACGGCCATCGAGGAGACATGTGGCTTTGCTGT
GGAATGA

Translation (748 aa):
MSNPGGRRNGPVKLRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHYDLYIG
KSDSVTISVWNHKKIHKKQGAGFLGCVRLLSNAINRLKDTGYQRLDLCKLGPNDNDTVRGQIVVSLQSRD
RIGTGGQVVDCSRLFDNDLPDGWEERRTASGRIQYLNHITRTTQWERPTRPASEYSSPGRPLSCFVDENT
PITGTNGATCGHSSDPRLAERRVRSQRHRNYMSRTHLHTPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWH
DPRVPRDLSNINCEELGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLSANLHLVLNRQNQLKDQQQQ
QVVPLCPDDTECLTVPRYKRDLVQKLKILRQELSQQQPQAGHCRIEVSREEIFEESYRQVMKMRPKDLWK
RLMIKFRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIM
GMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMELVDPDLHNSLVWILENDITGVLDHTFCVEHNAYGEII
QHELKPNGKSIPVTEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLG
KIDVSDWKVNTRLKHCTPDSNVVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTI
HQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCGFAVE


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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