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Report for CCDS72992.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72992.1 Public Homo sapiens 1 RGL1 24 110 108 CCDS HistoryNCBI Gene:23179Re-query CCDS DB by CCDS ID:72992.1Re-query CCDS DB by GeneID:23179See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72992.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360851.4 ENSP00000354097.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360851.4Link to Ensembl Protein Viewer:ENSP00000354097.3Re-query CCDS DB by Nucleotide ID:ENST00000360851Re-query CCDS DB by Protein ID:ENSP00000354097
Original member Current member NCBI NM_001297671.3 NP_001284600.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001297671.3Link to Protein Sequence:NP_001284600.1Re-query CCDS DB by Nucleotide ID:NM_001297671Re-query CCDS DB by Protein ID:NP_001284600Link to BLAST:NP_001284600.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001284600.1 768 Q9NZL6-1 768 100% 0 0

Chromosomal Locations for CCDS 72992.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 183805298 183805324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183806375 183806485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183847566 183847774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183865996 183866073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183880616 183880800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183883786 183883910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183884723 183884938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183888474 183888577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183892077 183892161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183897808 183897897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183900150 183900236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183902568 183902600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183904850 183904971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183907012 183907101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183912082 183912268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183916447 183916701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183922222 183922336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 183926105 183926292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2307 nt):
ATGAAATTGCTTTGGCAAGCTAAAATGAGCTCGATTCAGGACTGGGGTGAAGAGGTAGAGGAAGGAGCTG
TTTACCATGTCACCCTCAAAAGAGTCCAGATTCAACAGGCTGCCAATAAAGGAGCAAGATGGCTAGGGGT
TGAAGGGGACCAGCTGCCTCCAGGACACACAGTCAGTCAATATGAAACCTGTAAGATCAGGACCATAAAA
GCTGGCACCTTGGAGAAGCTTGTGGAGAACCTGCTGACAGCTTTTGGGGACAATGACTTTACCTATATCA
GCATCTTTCTTTCAACGTACAGAGGCTTTGCCTCCACTAAAGAAGTGCTGGAACTACTGCTGGACAGGTA
TGGAAACCTGACAAGCCCAAACTGTGAAGAAGATGGAAGCCAAAGTTCATCAGAGTCCAAAATGGTGATC
AGGAATGCAATCGCTTCCATACTAAGGGCCTGGCTTGACCAGTGTGCAGAAGACTTCCGAGAGCCCCCTC
ACTTCCCTTGCTTACAGAAACTGCTGGATTATCTCACACGGATGATGCCGGGCTCTGACCCAGAAAGAAG
AGCACAAAATCTTCTTGAGCAGTTTCAGAAGCAAGAAGTGGAAACTGACAATGGGCTTCCCAACACGATC
TCCTTCAGCCTGGAAGAGGAAGAGGAACTGGAGGGTGGAGAGTCAGCAGAATTCACGTGCTTCTCAGAAG
ATCTCGTGGCAGAGCAGCTGACCTACATGGATGCACAACTCTTCAAGAAAGTAGTGCCTCACCACTGCCT
GGGCTGCATTTGGTCTCGAAGGGATAAGAAGGAAAACAAACATTTGGCTCCTACGATCCGTGCCACCATC
TCTCAGTTTAATACCCTCACCAAATGTGTTGTCAGCACCATCCTGGGGGGCAAAGAACTCAAAACTCAGC
AGAGAGCCAAAATCATTGAGAAGTGGATCAACATCGCTCATGAATGTAGACTCCTGAAGAATTTTTCCTC
CTTGAGGGCCATCGTTTCGGCACTGCAGTCTAATTCCATCTATCGGTTAAAAAAGACTTGGGCTGCCGTC
CCAAGGGACCGAATGCTGATGTTTGAAGAACTTTCAGATATCTTCTCAGACCATAATAACCATTTGACCA
GCCGAGAACTACTGATGAAGGAAGGAACCTCAAAATTTGCAAACCTGGACAGCAGTGTGAAAGAAAACCA
GAAGCGTACCCAGAGGCGGCTGCAGCTCCAGAAGGACATGGGTGTGATGCAGGGAACTGTGCCCTACCTG
GGCACCTTCCTGACTGACCTGACCATGCTTGACACTGCCCTTCAGGACTACATCGAGGGTGGACTGATAA
ACTTTGAGAAAAGGAGAAGGGAATTTGAAGTGATTGCCCAGATAAAGCTCTTACAGTCTGCCTGCAACAG
CTATTGCATGACCCCAGACCAAAAGTTCATCCAGTGGTTCCAGAGGCAGCAGCTCCTGACAGAGGAGGAG
AGCTATGCCCTGTCATGTGAGATTGAAGCAGCTGCTGACGCCAGCACCACCTCGCCCAAGCCTCGGAAGA
GCATGGTGAAGAGACTCAGCCTACTGTTTCTAGGGTCTGACATGATCACCAGTCCCACTCCCACCAAAGA
GCAGCCCAAGTCCACTGCCAGCGGGAGCTCTGGTGAAAGCATGGACTCTGTCAGCGTGTCATCCTGCGAG
TCGAACCACTCAGAGGCTGAGGAGGGCTCCATTACTCCCATGGACACCCCTGATGAGCCTCAAAAAAAGC
TCTCTGAGTCCTCCTCATCCTGTTCTTCTATCCATTCCATGGACACAAATTCCTCAGGGATGTCTTCCTT
AATCAACCCCCTCTCCTCCCCTCCGTCCTGCAACAACAACCCCAAAATCCACAAGCGCTCTGTCTCGGTG
ACGTCCATTACCTCGACTGTGCTGCCTCCTGTTTACAACCAACAGAATGAAGACACCTGCATAATCCGCA
TCAGTGTGGAAGACAATAACGGCAACATGTACAAGAGCATCATGTTGACGAGCCAGGATAAAACCCCCGC
TGTGATCCAGAGAGCCATGCTGAAGCACAATCTGGACTCAGACCCCGCCGAGGAGTACGAGCTGGTGCAG
GTCATCTCGGAGGACAAAGAACTTGTGATTCCAGACTCAGCAAATGTCTTTTATGCCATGAACAGCCAAG
TGAACTTTGACTTCATTTTGCGCAAAAAGAACTCCATGGAAGAACAAGTGAAACTGCGTAGCCGGACCAG
CTTGACGTTGCCCAGGACAGCTAAACGGGGCTGCTGGAGTAACAGACACAGCAAAATCACCCTCTGA

Translation (768 aa):
MKLLWQAKMSSIQDWGEEVEEGAVYHVTLKRVQIQQAANKGARWLGVEGDQLPPGHTVSQYETCKIRTIK
AGTLEKLVENLLTAFGDNDFTYISIFLSTYRGFASTKEVLELLLDRYGNLTSPNCEEDGSQSSSESKMVI
RNAIASILRAWLDQCAEDFREPPHFPCLQKLLDYLTRMMPGSDPERRAQNLLEQFQKQEVETDNGLPNTI
SFSLEEEEELEGGESAEFTCFSEDLVAEQLTYMDAQLFKKVVPHHCLGCIWSRRDKKENKHLAPTIRATI
SQFNTLTKCVVSTILGGKELKTQQRAKIIEKWINIAHECRLLKNFSSLRAIVSALQSNSIYRLKKTWAAV
PRDRMLMFEELSDIFSDHNNHLTSRELLMKEGTSKFANLDSSVKENQKRTQRRLQLQKDMGVMQGTVPYL
GTFLTDLTMLDTALQDYIEGGLINFEKRRREFEVIAQIKLLQSACNSYCMTPDQKFIQWFQRQQLLTEEE
SYALSCEIEAAADASTTSPKPRKSMVKRLSLLFLGSDMITSPTPTKEQPKSTASGSSGESMDSVSVSSCE
SNHSEAEEGSITPMDTPDEPQKKLSESSSSCSSIHSMDTNSSGMSSLINPLSSPPSCNNNPKIHKRSVSV
TSITSTVLPPVYNQQNEDTCIIRISVEDNNGNMYKSIMLTSQDKTPAVIQRAMLKHNLDSDPAEEYELVQ
VISEDKELVIPDSANVFYAMNSQVNFDFILRKKNSMEEQVKLRSRTSLTLPRTAKRGCWSNRHSKITL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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