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Report for CCDS17992.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17992.1 Public Mus musculus 4 Rmdn1 23 108 98 CCDS HistoryNCBI Gene:66302Re-query CCDS DB by CCDS ID:17992.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17992.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029888.3 ENSMUSP00000029888.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029888.3Link to Ensembl Protein Viewer:ENSMUSP00000029888.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000029888Re-query CCDS DB by Protein ID:ENSMUSP00000029888
Original member Current member NCBI NM_025476.6 NP_079752.3 Accepted alive Link to Nucleotide Sequence:NM_025476.6Link to Protein Sequence:NP_079752.3Re-query CCDS DB by Nucleotide ID:NM_025476Re-query CCDS DB by Protein ID:NP_079752Link to BLAST:NP_079752.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079752.3 305 Q9DCV4 305 100% 0 0

Chromosomal Locations for CCDS 17992.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 19575214 19575327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19580390 19580507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19586776 19586863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19588526 19588685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19595070 19595159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19599614 19599669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19601356 19601443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19602643 19602673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19605403 19605536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19606085 19606123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGGCGCTGTCCTCGCGACTGTGGCGTCGTCTCCCTCCACTCCGCGTCTGTCAGCAGACGAGGACCTGGG
GCAGCCGTGGGCGCTGTGGCGCCTGGGGAGTCCGCGCTTGCGAGGTGATAGGAAATACAAGACCTTTCAA
GAGAGGCTTTTTATTCTCAGCCTTGTCTTATTTGGGTTTTGAAACCTATCAAATCATTTCTCAGGCTGCT
GTGGTTCATGCCACAGCCAAAGTTGAAGAAATACTTGCGCAAGCAGACTACCTCTATGAAAGTGGAGAAA
CAGAAAAGCTTTATCAGTTGCTTATACAGTACAAGGAAAGTGAGGATGGAGAGCTACTATGGCGGCTGGC
ACGAGCATCCCGTGACATTGCACAGCTTAGTAAGACTTCAGAAGAAGAAAAGAAAGTTTTGGTGTATGAA
GCTCTAGATTATGCAAAAAGAGCACTAGAGAAAAAGGAGTCAAGCTCTGCTGCTCATAAGTGGTATGCAA
TCTGCATTAGTGATGTTGGAGATTATGAAGGCATCAAGGTTAAGATTGCAAATGCCTATGTTATCAAGGA
GCATTTTGAGAAAGCAATTGAGCTGAACCCTAAAGATGCTACTTCAATTCACCTTATGGGTATTTGGTGC
TATACATTTGCTGAAATGCCTTGGTATCAAAGAAGAATTGCTAAAGTGCTGTTTGCAAATCCTCCTAGTT
CCACCTATGAGGAGGCCTTAAGATACTTTCACAAAGCAGAAGAAGTGGATCCAAACTTCTACAGCAAAAA
CTTGCTGCTTTTAGGAAAGACATACTTGAAGCTAAACAACAAAAAGCTTGCTGCGTTCTGGTTGGTAAAA
GCCAAGGGTTATCCAGCACACACAGAAGAAGATAAACAGATACAGACAGAAGCTGCTCAGTTGCTTACAG
GTTTGTGA

Translation (305 aa):
MALSSRLWRRLPPLRVCQQTRTWGSRGRCGAWGVRACEVIGNTRPFKRGFLFSALSYLGFETYQIISQAA
VVHATAKVEEILAQADYLYESGETEKLYQLLIQYKESEDGELLWRLARASRDIAQLSKTSEEEKKVLVYE
ALDYAKRALEKKESSSAAHKWYAICISDVGDYEGIKVKIANAYVIKEHFEKAIELNPKDATSIHLMGIWC
YTFAEMPWYQRRIAKVLFANPPSSTYEEALRYFHKAEEVDPNFYSKNLLLLGKTYLKLNNKKLAAFWLVK
AKGYPAHTEEDKQIQTEAAQLLTGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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