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Report for CCDS19402.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19402.1 Public Mus musculus 5 Utp3 23 108 98 CCDS HistoryNCBI Gene:65961Re-query CCDS DB by CCDS ID:19402.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19402.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090413.5 ENSMUSP00000087896.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090413.5Link to Ensembl Protein Viewer:ENSMUSP00000087896.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000090413Re-query CCDS DB by Protein ID:ENSMUSP00000087896
Original member Current member NCBI NM_023054.2 NP_075541.1 Accepted alive Link to Nucleotide Sequence:NM_023054.2Link to Protein Sequence:NP_075541.1Re-query CCDS DB by Nucleotide ID:NM_023054Re-query CCDS DB by Protein ID:NP_075541Link to BLAST:NP_075541.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075541.1 469 Q9JI13-1 469 100% 0 0

Chromosomal Locations for CCDS 19402.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 88554614 88556023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGGTGAAGAAATCACGGCGGCGTGGAGCGGCTCAGTGGGCCGCCGTGCGGGCCCAGGCAGGTCTCACCG
CCACGGACGAAAATGAGGACGACTTGGGGTTGCCGCCCTCTCCAGGGGACTCCAGCTACTACCAAGACCA
GGTAGATGAGTTCCATGAAGCGCGATCTCGGGCAGTCCTGGCCAAGGGCTGGAACGAAGTCGAGAGTGGG
GAGGAGGATGGCGATGAGGAGGAAGAGGTGCTACCTCTAGATATTGATGATGGAGATGACGAAGATGGAG
AGAGTTCGGAGGAGGAGGAGGTTGGAGAGGATGATGACGGCGGAAGCTCCGTGCAGAGTGAGGCTGAGGC
CTCTGTGGACCCTAGCTTGTCCTGGGGTCAGAGAAAAAAGCTTTATTACGATACGGACTATGGTTCCAAA
TCCCGAGGCCGTCAGAGTCAGCAAGAAGTAGAAGAGGAGGAAAGAGAAGAAGAGGAGGAGGCACAGATAA
TTCAGCGGCGCTTGGCCCAAGCCCTGCAAGAGGATGATTTTGGAGTCGCTTGGGTGGAGGCCTTTGCAAA
GCCGGTGCCCCAGGTAGACGAAGCTGAGACAAGGGTTGTGAAGGATTTGGCTAAAGTCTCGGTAAAAGAG
AAGCTGAAAATGTTGAAGAAAGAATCACCAGAGCTCTTAGAGCTCATAGAAGACCTCCAAGCCAAGTTGA
CAGAGGTGAAGGATGAGTTAGAACCCTTGTTACAGTTGGTGGAGAAAGGGGTCATTCCAACTGGAAGAGG
AAGCGAATACCTGAAGACTAAGTATAATCTCTACTTGAACTATTGCGCCAACATTAGCTTTTATTTGATC
TTAAAAGCCCGGAGAGTCCCTGCACATGGACATCCTGTTATAGAAAGGCTTGTTACCTACAGAAATCTGA
TCAACAAGCTGTCGGTTGTGGATCAGAAACTGTCCTCTGAAATCCGTCACCTCCTCACAGCCAAGGATGG
TGCTGTAAAGAAAGAAATGACTCCAAAAGCAAAATTAACCAAAACCAAGCCCAAGTCTGTAAAGCAGGCT
GCTGCTGTTGCCCTGACTGATGAGCCTGATTTTGATGGGGCTGCTCTCAAGTACTATAAGGAAATGGAAG
ACAGGCAAGAGTTGAAGAGAAAGAAGGAAGAAAACAGTGCTGAAGAACAGGCTCTCGAAGAACAAAATGC
AAAGAGAGCCATTACCTACCAGATTGCTAAAAATAGGGGACTTACACCCAGGAGAAAGAAGATTGATAGA
AATCCCAGAGTGAAACATAGGGAAAAGTTCAGAAAAGCCAAAATCCGACGACGAGGCCAGGTTCGTGAAG
TTCGCAGAGAAGAACAGCGGTACAGTGGTGAACTCTCTGGCATTCGTGCTGGAGTTAAGAAGAGCATTAA
GCTTAAGTAA

Translation (469 aa):
MVKKSRRRGAAQWAAVRAQAGLTATDENEDDLGLPPSPGDSSYYQDQVDEFHEARSRAVLAKGWNEVESG
EEDGDEEEEVLPLDIDDGDDEDGESSEEEEVGEDDDGGSSVQSEAEASVDPSLSWGQRKKLYYDTDYGSK
SRGRQSQQEVEEEEREEEEEAQIIQRRLAQALQEDDFGVAWVEAFAKPVPQVDEAETRVVKDLAKVSVKE
KLKMLKKESPELLELIEDLQAKLTEVKDELEPLLQLVEKGVIPTGRGSEYLKTKYNLYLNYCANISFYLI
LKARRVPAHGHPVIERLVTYRNLINKLSVVDQKLSSEIRHLLTAKDGAVKKEMTPKAKLTKTKPKSVKQA
AAVALTDEPDFDGAALKYYKEMEDRQELKRKKEENSAEEQALEEQNAKRAITYQIAKNRGLTPRRKKIDR
NPRVKHREKFRKAKIRRRGQVREVRREEQRYSGELSGIRAGVKKSIKLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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