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Report for CCDS27089.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27089.1 Public Mus musculus 14 Lrp10 23 108 98 CCDS HistoryNCBI Gene:65107Re-query CCDS DB by CCDS ID:27089.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27089.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022782.9 ENSMUSP00000022782.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022782.9Link to Ensembl Protein Viewer:ENSMUSP00000022782.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022782Re-query CCDS DB by Protein ID:ENSMUSP00000022782
Original member Current member NCBI NM_022993.3 NP_075369.2 Accepted alive Link to Nucleotide Sequence:NM_022993.3Link to Protein Sequence:NP_075369.2Re-query CCDS DB by Nucleotide ID:NM_022993Re-query CCDS DB by Protein ID:NP_075369Link to BLAST:NP_075369.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075369.2 713 Q7TQH7 713 100% 0 0

Chromosomal Locations for CCDS 27089.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 54464575 54464611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54464904 54464948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54465574 54465709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54467460 54467650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54467764 54468781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54469036 54469165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54469265 54469849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2142 nt):
ATGCTATCGGCCCTCCCTCTTCTTTTCCTCCTCCTCGGAGGTGCTCTGGCCCGCCCAGACCGGATCACTT
TCCCACGTTCTGCTTGTGAGGCGCCCCCAGCTGTGCTCTCAGAAGTACAAGGCACTTTACAGAGGCCTCT
AGGCCGGGACAGCCGAAGCTCCCCTGCCAACTGCACCTGGGTTATCCTGGGCAGCAAGGATCAGACAGTA
ACTGTCAGGTTCCAGAAGCTGCATCTGGCCTGTGGCTCAGAGCATTTAATCCTGCACTCCCCTCTACAGC
CACCAATCTCCCTGTGTGAGGCCCCTTCTGGCCCTTTGCAGCTACCAGGGGGCAATGTCACCATTACATA
CAGCTATGCTGGGGCCAGAGCACCCATGGGCCAGGGCTTCTTGCTGACTTACAGTCAAGATTGGCTACTG
TGCCTGCAAGAAGAATTCCAGTGCCTGAACCACCGCTGCATTCCAGCTGCTCAGCGCTGTGATGGGATTG
ATGCCTGCGGGGATGGCTCAGACGAGGCAGGCTGCAGCTCAGATCCATTCCCTAACCTGAACCCAGCCCC
CGCACCAACTCTGGCCTGCAATCTCACCTTGGAGGACTTTTATGGGGTCTTTTCTTCCCCTGGATATTCA
CACCTGGCCTCAGTCTCCCACCCCCAGTCCTGCCTGTGGCTGCTGGACCCCCATGATGGCCGGAGGCTGG
CAGTGCGCTTCACAGCCCTGGACTTGAGTTACGGAGATGCAGTGCATGTGTATGATGGTGCTGGACCCCC
CGAGACCCCTCGACTGCTACGTAGCCTCACCCACTTCAGCAATGGCAAGGCTGTCACTGTGGAGACCCTG
TCTGGTCAGGCTGTTGTGTCCTACCACACAGTTGCTTGGAGCAGTGGCCGGGGCTTTAATGCTACCTACC
ATGTCCGGGGCTACTGTTTACCTTGGGACAGACCCTGTGGCTTGGGCTCTGGCCTGGGGGCTAGTGAGAA
CCTAGGTGAGCGTTGCTATAGCGAGGCACAGCGCTGTGATGGCTCATGGGACTGTGCCGATGGCACAGAT
GAGGAGGGTTGCCCTGGCTGCCCACCAGGGCACTTCCCCTGTGGAGCTGCAGGCACCCCTGGTGCCACAG
CCTGCTACCTGCCTGCTGACCGCTGCAACTACCAGACGTTCTGCGCCGATGGAGCGGATGAGAGGCGCTG
CCGGCATTGCCAGCCCGGCAACTTCCGGTGCCGGGATGAGAAGTGTGTGTATGAGACATGGGTGTGTGAT
GGGCAGCCAGACTGTACTGACGGCAGTGATGAGTGGGACTGCTCCTACGCCCTGCCCCGAAAAGTCATCA
CAGCAGCAGTCATTGGCAGCCTGGTGTGTGGCCTGTTGCTGGTCATCGCTCTCGGCTGCACCTGCAAACT
CTATGCCATCCGCACCCAGGAATACAGCATCTTTGCCCCGCTCTCCCGGATGGAGGCTGAGATTGTGCAG
CAACAGGCACCCCCTTCCTATGGGCAGCTCATTGCCCAGGGTGCCATCCCGCCTGTGGAAGACTTCCCCA
CAGAGAACCCTAACGATAACTCTGTGCTGGGAAACCTACGTTCTCTGCTTCAGATCTTACGCCAGGATAT
GACTCCAGGTGGTACTTCAGGGGGCCGCCGTCGCCAGCGTGGACGCTCCATCCGCCGTCTGGTTCGCCGT
CTCCGTCGTTGGGGCCTGCTTCCTCGAACTAATACCCCAGCTCGGGCCCCTGAGACCAGATCCCAGGTCA
CACCCTCTGTTCCCTCTGAGGCCCTGGATGACAGCACAGGCCAAGCCTGTGAGGGTGGGGCAGTAGGGGG
GCAAGATGGGGAGCAGGCTCCTCCACTGCCCATCAAGACCCCCATCCCAACCCCAAGCACACTTCCTGCC
CTTGCTACTGTCTCTGAGCCCCCAGGGCCACTACCCTCAGTGCCTGTAGAATCATCACTGTTGTCTGGAG
TTGTCCAGGTCCTACGAGGCCGCCTCCTACCCAGCCTGTGGTCCCCAGGCCCCACTTGGACCCAAACTGG
AACTCACACAACAGTCCTGTCCCCAGAGGATGAGGACGATGTATTGTTATTGCCACTGGCTGAGCCAGAA
GTCTGGGTGGTGGAGGCAGAGGATGAACCATTGCTTGCCTGA

Translation (713 aa):
MLSALPLLFLLLGGALARPDRITFPRSACEAPPAVLSEVQGTLQRPLGRDSRSSPANCTWVILGSKDQTV
TVRFQKLHLACGSEHLILHSPLQPPISLCEAPSGPLQLPGGNVTITYSYAGARAPMGQGFLLTYSQDWLL
CLQEEFQCLNHRCIPAAQRCDGIDACGDGSDEAGCSSDPFPNLNPAPAPTLACNLTLEDFYGVFSSPGYS
HLASVSHPQSCLWLLDPHDGRRLAVRFTALDLSYGDAVHVYDGAGPPETPRLLRSLTHFSNGKAVTVETL
SGQAVVSYHTVAWSSGRGFNATYHVRGYCLPWDRPCGLGSGLGASENLGERCYSEAQRCDGSWDCADGTD
EEGCPGCPPGHFPCGAAGTPGATACYLPADRCNYQTFCADGADERRCRHCQPGNFRCRDEKCVYETWVCD
GQPDCTDGSDEWDCSYALPRKVITAAVIGSLVCGLLLVIALGCTCKLYAIRTQEYSIFAPLSRMEAEIVQ
QQAPPSYGQLIAQGAIPPVEDFPTENPNDNSVLGNLRSLLQILRQDMTPGGTSGGRRRQRGRSIRRLVRR
LRRWGLLPRTNTPARAPETRSQVTPSVPSEALDDSTGQACEGGAVGGQDGEQAPPLPIKTPIPTPSTLPA
LATVSEPPGPLPSVPVESSLLSGVVQVLRGRLLPSLWSPGPTWTQTGTHTTVLSPEDEDDVLLLPLAEPE
VWVVEAEDEPLLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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