NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10379.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10379.2 Public Homo sapiens 15 TTC23 24 110 108 CCDS HistoryNCBI Gene:64927Re-query CCDS DB by CCDS ID:10379.2See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 10379.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394132.7 ENSP00000377690.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394132.7Link to Ensembl Protein Viewer:ENSP00000377690.2Re-query CCDS DB by Nucleotide ID:ENST00000394132Re-query CCDS DB by Protein ID:ENSP00000377690
Original member Current member EBI ENST00000394135.7 ENSP00000377692.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394135.7Link to Ensembl Protein Viewer:ENSP00000377692.3Re-query CCDS DB by Nucleotide ID:ENST00000394135Re-query CCDS DB by Protein ID:ENSP00000377692
Original member Current member EBI ENST00000558663.5 ENSP00000452923.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000558663.5Link to Ensembl Protein Viewer:ENSP00000452923.1Re-query CCDS DB by Nucleotide ID:ENST00000558663Re-query CCDS DB by Protein ID:ENSP00000452923
Original member Current member NCBI NM_001288615.3 NP_001275544.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001288615.3Link to Protein Sequence:NP_001275544.1Re-query CCDS DB by Nucleotide ID:NM_001288615Re-query CCDS DB by Protein ID:NP_001275544Link to BLAST:NP_001275544.1
Original member Current member NCBI NM_001288616.3 NP_001275545.1 Accepted alive Link to Nucleotide Sequence:NM_001288616.3Link to Protein Sequence:NP_001275545.1Re-query CCDS DB by Nucleotide ID:NM_001288616Re-query CCDS DB by Protein ID:NP_001275545Link to BLAST:NP_001275545.1
Original member Current member NCBI NM_001353869.2 NP_001340798.1 Accepted alive Link to Nucleotide Sequence:NM_001353869.2Link to Protein Sequence:NP_001340798.1Re-query CCDS DB by Nucleotide ID:NM_001353869Re-query CCDS DB by Protein ID:NP_001340798Link to BLAST:NP_001340798.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001275544.1 447 Q5W5X9-1 447 100% 0 0
NP_001275545.1 447 Q5W5X9-1 447 100% 0 0
NP_001340798.1 447 Q5W5X9-1 447 100% 0 0

Chromosomal Locations for CCDS 10379.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 99138010 99138127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99139317 99139399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99156148 99156297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99161740 99161867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99175050 99175155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99199919 99200096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99218588 99218713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99218898 99219048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99221741 99221864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99228533 99228712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGCAAGAATCACAGGAAACCCACATATCCAACCACCTAGATGAAGTTGTTGCTGCTGTTAGCATCACTC
ATAGAAAGAAGTTCCAAAACAAGCTGCTTCAGACAGCACTATTCCAGCCTCCTCGAGAGAAACTCCACCT
CTGTGAAGAGAAAGCAAAGTCCTATTCCAACAGTCATGAGTACAAACAGGCCGTCCATGAGCTTGTGCGT
TGCGTAGCACTGACAAGAATTTGCTATGGAGACTCACATTGGAAACTAGCAGAGGCACATGTTAATCTGG
CTCAAGGCTACCTCCAGCTGAAAGGACTGTCACTGCAAGCAAAACAACATGCAGAAAAAGCCAGACAAAT
CCTCGCCAACTCCATTGTGCCTCCCTATAGTGAGAATACAGATGTTTTCAAGTTTTCCATTGAGCTTTTC
CATACCATGGGCAGAGCTTTACTCTCCCTTCAAAAATTTAAGGAAGCTGCAGAGAATTTGACAAAAGCAG
AGAGACTTTCAAAGGAGCTGCTACAATGTGGAAGAATTATAAAGGAAGAATGGATAGAAATTGAAGCACG
GATCAGATTATCATTTGCACAGGTGTATCAAGGTCAGAAGAAGTCAAAAGAAGCTTTGTCCCACTATCAA
GCAGCTTTGGAATATGTTGAGATCAGTAAAGGTGAAACAAGTCGTGAGTGTGTACCCATATTGAGAGAAT
TAGCAGGTGTAGAGCAAGCCCTGGGACTCCACGATGTATCCATCAACCACTTCCTCCAGGCACATCTTAT
CATCCTGAGTAGAAGCCCCTCTCAAGTGGAGGCAGCAGACTCGGCACACATCGTCGCCCATGCTGCTGTC
GCTTCAGGGAGACACGAGCACCATGATGTAGCTGAGCAGTATTTTCAAGAGAGCATGGCTCATCTTAAGG
ATTCTGAAGGGATGGGAAGAACCAAATTTCTTTCAATTCAAGATGAATTTTGCCATTTTCTACAAATGAC
TGGACAAAAAGAGAGAGCAACCTCGATCCTGAGAGAGTCCCTGGAAGCCAAAGTGGAAGCATTTGGCGAT
TTCAGTCCCGAGGTGGCAGAGACATACCGGCTCCTGGGAGGAGCAGACCTGGCGCAGGGGAACCACAGTG
GGGCCCGCAAGAAACTGAAGAAGTGTCTCCAGATCCAGACCCTCTTATATGGACCGCAGGACAAAAGGAC
TCTGGCCACCCAGCAGGCCATGGGCATGCTGTCCACGGCCCCCAAGGTTGCTTCGAAGCCAAGGCAGGCA
TCAAAAGCCAAAGTGGCCTTCTGCACCAGCATCCCTCAGGACACCCTGCTGGGGAAGGCCCGGCCCGGCA
CAACAGCAGACTGA

Translation (447 aa):
MQESQETHISNHLDEVVAAVSITHRKKFQNKLLQTALFQPPREKLHLCEEKAKSYSNSHEYKQAVHELVR
CVALTRICYGDSHWKLAEAHVNLAQGYLQLKGLSLQAKQHAEKARQILANSIVPPYSENTDVFKFSIELF
HTMGRALLSLQKFKEAAENLTKAERLSKELLQCGRIIKEEWIEIEARIRLSFAQVYQGQKKSKEALSHYQ
AALEYVEISKGETSRECVPILRELAGVEQALGLHDVSINHFLQAHLIILSRSPSQVEAADSAHIVAHAAV
ASGRHEHHDVAEQYFQESMAHLKDSEGMGRTKFLSIQDEFCHFLQMTGQKERATSILRESLEAKVEAFGD
FSPEVAETYRLLGGADLAQGNHSGARKKLKKCLQIQTLLYGPQDKRTLATQQAMGMLSTAPKVASKPRQA
SKAKVAFCTSIPQDTLLGKARPGTTAD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH