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Report for CCDS54886.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54886.1 Public Homo sapiens 5 FBXL17 24 110 108 CCDS HistoryNCBI Gene:64839Re-query CCDS DB by CCDS ID:54886.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54886.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000542267.7 ENSP00000437464.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000542267.7Link to Ensembl Protein Viewer:ENSP00000437464.2Re-query CCDS DB by Nucleotide ID:ENST00000542267Re-query CCDS DB by Protein ID:ENSP00000437464
Original member Current member NCBI NM_001163315.3 NP_001156787.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001163315.3Link to Protein Sequence:NP_001156787.2Re-query CCDS DB by Nucleotide ID:NM_001163315Re-query CCDS DB by Protein ID:NP_001156787Link to BLAST:NP_001156787.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156787.2 701 Q9UF56-1 701 100% 0 0

Chromosomal Locations for CCDS 54886.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 107861720 107861860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107881037 107881179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108020925 108021001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108186117 108186247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108224121 108224228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108348399 108348530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108364738 108364995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108367831 108367953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108380699 108381691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2106 nt):
ATGGGCCACCTTCTCTCGAAGGAGCCGCGTAACCGCCCGAGCCAGAAGAGGCCTCGCTGTTGCAGTTGGT
GC
CGCCGCCGGCGCCCTCTCCTCAGGCTGCCCCGCCGGACCCCAGCCAAGGTGCCCCCTCAGCCGGCGGC
G
CCCCGGAGCCGGGACTGCTTCTTCCGCGGGCCCTGCATGCTCTGCTTCATCGTGCACAGTCCCGGCGCG
CCC
GCCCCCGCCGGCCCAGAGGAGGAGCCGCCGCTCTCGCCGCCGCCGCGGGACGGGGCCTACGCTGCCG
CC
TCCTCCTCTCAGCACCTGGCGCGGCGCTACGCGGCCCTGGCCGCCGAGGACTGCGCCGCTGCTGCCCG
C
CGCTTCCTGCTATCCTCGGCCGCCGCCGCCGCCGCCGCTGCCGCCTCGGCTTCGTCGCCCGCCTCCTGC
TGC
AAAGAGTTGGGGCTGGCTGCGGCCGCCGCCTGGGAGCAGCAGGGCCGAAGTCTCTTCCTGGCCAGCT
TG
GGGCCGGTGCGCTTCCTGGGGCCGCCCGCCGCCGTGCAGCTCTTCCGGGGGCCGACACCGTCACCGGC
C
GAGCTCCCTACGCCCCCCGAAATGGTGTGCAAGCGGAAGGGGGCCGGGGTCCCCGCCTGCACCCCCTGC
AAG
CAGCCCCGCTGCGGCGGCGGGGGCTGCGGCGGCGGCGGCGGCGGCGGTGGCGGGGGAGGGCCTGCGG
GG
GGAGGCGCTTCGCCGCCCCGGCCCCCCGACGCCGGCTGCTGCCAGGCCCCGGAGCAGCCCCCGCAGCC
G
CTCTGCCCTCCGCCCTCTTCTCCCACCTCCGAAGGTGCCCCCACCGAAGCTGGCGGGGACGCTGTCCGA
GCC
GGGGGCACCGCCCCCTTGTCCGCCCAGCAGCAGCATGAATGTGGCGACGCGGACTGTCGGGAGTCCC
CC
GAAAACCCCTGCGACTGTCACAGGGAGCCGCCCCCCGAAACCCCAGACATCAACCAGCTGCCGCCGTC
C
ATCCTGCTCAAGATATTTTCCAATTTGTCACTGGATGAGCGTTGCCTTTCCGCATCATTGGTTTGCAAG
TAC
TGGCGTGACCTTTGTTTAGACTTCCAGTTTTGGAAGCAGCTGGATCTTAGTAGTCGTCAGCAGGTCA
CT
GATGAATTGTTGGAAAAAATTGCATCAAGAAGTCAGAATATAATTGAAATCAACATTTCTGATTGTCG
C
AGTATGTCTGATAATGGCGTATGTGTTTTAGCATTTAAATGTCCTGGACTTCTTAGGTATACAGCCTAC
AGG
TGTAAACAGCTTTCTGACACCTCTATTATTGCGGTTGCCTCTCACTGTCCTTTACTTCAGAAAGTGC
AT
GTAGGCAACCAGGACAAACTCACTGATGAAGGACTCAAGCAGCTGGGCTCAAAATGCAGAGAACTCAA
A
GATATTCATTTCGGCCAGTGTTACAAGATCTCAGATGAAGGCATGATCGTCATAGCTAAGGGCTGTCTG
AAA
TTACAAAGGATATACATGCAGGAAAACAAATTAGTGACAGATCAGTCAGTGAAAGCATTTGCTGAAC
AC
TGTCCTGAGCTTCAATATGTAGGCTTCATGGGTTGTTCAGTCACTTCTAAAGGAGTCATTCACCTAAC
C
AAGCTAAGAAACCTTTCCAGCTTGGACCTACGTCATATCACTGAACTGGATAATGAAACCGTGATGGAA
ATT
GTCAAGAGGTGCAAAAATCTTAGCTCTCTCAATCTCTGTCTGAACTGGATCATAAATGACAGGTGTG
TG
GAGGTCATTGCAAAGGAAGGACAAAACCTGAAAGAGCTATATTTGGTGTCCTGTAAAATCACAGATTA
T
GCACTGATAGCCATTGGGCGATACAGCATGACAATAGAGACTGTGGATGTCGGATGGTGTAAAGAAATC
ACA
GACCAAGGAGCCACCCTGATTGCACAGAGCAGCAAGTCTCTGAGATATTTGGGGCTGATGAGATGTG
AT
AAAGTCAACGAAGTGACGGTGGAACAGCTGGTGCAGCAGTACCCCCACATCACCTTCAGCACCGTCCT
G
CAGGACTGCAAGAGGACCTTGGAGAGAGCCTATCAGATGGGCTGGACCCCCAACATGTCTGCCGCCTCC
TCC
TAG


Translation (701 aa):
MGHLLSKEPRNRPSQKRPRCCSWCRRRRPLLRLPRRTPAKVPPQPAAPRSRDCFFRGPCMLCFIVHSPGA
P
APAGPEEEPPLSPPPRDGAYAAASSSQHLARRYAALAAEDCAAAARRFLLSSAAAAAAAAASASSPASC
C
KELGLAAAAAWEQQGRSLFLASLGPVRFLGPPAAVQLFRGPTPSPAELPTPPEMVCKRKGAGVPACTPC
K
QPRCGGGGCGGGGGGGGGGGPAGGGASPPRPPDAGCCQAPEQPPQPLCPPPSSPTSEGAPTEAGGDAVR
A
GGTAPLSAQQQHECGDADCRESPENPCDCHREPPPETPDINQLPPSILLK
IFSNLSLDERCLSASLVCK
Y
WRDLCLDFQFWKQLDLSSRQQ
VTDELLEKIASRSQNIIEINISDCRSMSDNGVCVLAFKCPGLLRYTAY
R
CKQLSDTSIIAVASHCPLLQKVHVGNQDKLTDEGLKQ
LGSKCRELKDIHFGQCYKISDEGMIVIAKGCL
K
LQRIYMQENKL
VTDQSVKAFAEHCPELQYVGFMGCSVTSKGVIHLTKLRNLSSLDLRHITELDNETVME
I
VKRCKNLSSLNLCLNWIIND
RCVEVIAKEGQNLKELYLVSCKITDYALIAIGRYSMTIETVDVGWCKEI
T
DQGATLIAQSSKSLRYLGLMRCDK
VNEVTVEQLVQQYPHITFSTVLQDCKRTLERAYQMGWTPNMSAAS
S




Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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