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Report for CCDS31271.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31271.2 Public Homo sapiens 10 FBXW4 24 110 108 CCDS HistoryNCBI Gene:6468Re-query CCDS DB by CCDS ID:31271.2See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 31271.1
The coding region has been updated to extend the N-terminus and this extension is supported by conservation data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 31271.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331272.9 ENSP00000359149.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000331272.9Link to Ensembl Protein Viewer:ENSP00000359149.3Re-query CCDS DB by Nucleotide ID:ENST00000331272Re-query CCDS DB by Protein ID:ENSP00000359149
Original member Current member NCBI NM_022039.4 NP_071322.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022039.4Link to Protein Sequence:NP_071322.2Re-query CCDS DB by Nucleotide ID:NM_022039Re-query CCDS DB by Protein ID:NP_071322Link to BLAST:NP_071322.2

Chromosomal Locations for CCDS 31271.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 101611291 101611410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101611628 101611769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101612337 101612477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101624745 101624810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101667886 101667980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101672915 101673047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101673488 101673673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101676341 101676436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 101694381 101695105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1704 nt):
ATGGGCAGCCAGGGCCGCTCGGGGCCCCCCGGGAACGGCGGGCCCGGCGAGGGCGAGGGCGGAGAGGCGA
GGAAGCTGCAGGAAGGGAGGGTGGCGAGGGGGAAGCGAAGGAAGGGGAAGGGGAAGGGAAAAGCGAGAGC
GGGGCAAGGCGGAAGAGGAAGCGGGGCGGAAGGGAAGCCCGGGCCGCAGACGGCGAAGGAGGCAGCCGGG
CCGGGGGCTGACGCGGGAGCGAGGGCATGCCCAAGGGAGGAAGCAGAGGGAGGCAGAAGCGTGGAGGAAG
GGGCGAGAGGCATCGTCAAGGGAGTCGAGGGGAGCGCAGGGGCCGGGAAGGAGGCACAAGGAAGAGAGTA
TGGGAAGAAGGAGGAATGGAGGGTCAGGGCTAGGCGGCGGGAGGGCGCCAGGCCGGGAAGAGCACAGGGA
CGAGGGGGTCAGGCTTGGGCCGACATCGCGGGGACAGGGGTGGCCATGGCGGCGGCGGCCGGGGAGGAGG
AGGAGGAGGAGGAGGCGGCTCGGGAGTCGGCTGCCCGCCCGGCCGCGGGGCCTGCGCTCTGGCGCCTGCC
GGAGGAGCTGCTGCTGCTCATCTGCTCCTACCTGGACATGCGGGCCCTCGGCCGCCTGGCCCAGGTGTGC
CGCTGGCTGCGGCGCTTCACCAGCTGCGATCTGCTCTGGCGCCGGATAGCCCGGGCCTCGCTCAACTCCG
GCTTCACGCGGCTCGGCACCGACCTGATGACCAGTGTCCCAGTGAAGGAACGAGTGAAGGTGTCTCAGAA
CTGGAGACTGGGGCGCTGCCGAGAGGGGATTCTGCTGAAGTGGAGATGCAGTCAGATGCCCTGGATGCAG
CTAGAGGATGATTCTCTGTACATATCCCAGGCTAATTTCATCCTGGCCTACCAGTTCCGTCCAGATGGTG
CCAGCTTGAATCGTCGGCCTCTGGGAGTCTTTGCTGGGCATGATGAGGACGTTTGCCACTTTGTGCTGGC
CAACTCGCATATTGTTAGTGCAGGAGGGGATGGGAAGATTGGCATTCATAAGATTCACAGCACCTTCACT
GTCAAGTACTCGGCTCATGAACAGGAGGTGAACTGTGTGGATTGCAAAGGGGGCATCATTGTGAGTGGCT
CCAGGGACAGGACGGCCAAGGTGTGGCCTTTGGCCTCAGGCCGGCTGGGGCAGTGCTTACACACCATCCA
GACTGAAGACCGAGTCTGGTCCATTGCTATCAGCCCATTACTCAGCTCTTTTGTGACAGGGACGGCTTGT
TGCGGGCACTTCTCACCCCTGAGAATCTGGGACCTCAACAGTGGGCAGCTGATGACACACTTGGGCAGTG
ACTTTCCCCCAGGGGCTGGGGTGCTGGATGTCATGTATGAGTCCCCTTTCACACTGCTGTCCTGTGGCTA
TGACACCTATGTTCGCTACTGGGACCTCCGCACCAGCGTCCGGAAATGTGTCATGGAGTGGGAGGAGCCC
CACGACAGCACCCTGTACTGCCTGCAGACAGATGGCAACCACCTGCTGGCCACAGGTTCCTCCTACTACG
GTGTTGTACGGCTGTGGGACCGGCGTCAAAGGGCCTGCCTGCACGCCTTCCCGCTGACGTCGACTCCCCT
CAGCAGCCCTGTGTACTGCCTGCGTCTCACCACCAAGCATCTCTATGCTGCCCTGTCTTACAACCTCCAC
GTCCTGGATTTTCAAAACCCATGA

Translation (567 aa):
MGSQGRSGPPGNGGPGEGEGGEARKLQEGRVARGKRRKGKGKGKARAGQGGRGSGAEGKPGPQTAKEAAG
PGADAGARACPREEAEGGRSVEEGARGIVKGVEGSAGAGKEAQGREYGKKEEWRVRARRREGARPGRAQG
RGGQAWADIAGTGVAMAAAAGEEEEEEEAARESAARPAAGPALWRLPEELLLLICSYLDMRALGRLAQVC
RWLRRFTSCDLLWRRIARASLNSGFTRLGTDLMTSVPVKERVKVSQNWRLGRCREGILLKWRCSQMPWMQ
LEDDSLYISQANFILAYQFRPDGASLNRRPLGVFAGHDEDVCHFVLANSHIVSAGGDGKIGIHKIHSTFT
VKYSAHEQEVNCVDCKGGIIVSGSRDRTAKVWPLASGRLGQCLHTIQTEDRVWSIAISPLLSSFVTGTAC
CGHFSPLRIWDLNSGQLMTHLGSDFPPGAGVLDVMYESPFTLLSCGYDTYVRYWDLRTSVRKCVMEWEEP
HDSTLYCLQTDGNHLLATGSSYYGVVRLWDRRQRACLHAFPLTSTPLSSPVYCLRLTTKHLYAALSYNLH
VLDFQNP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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