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Report for CCDS73059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73059.1 Public Homo sapiens 1 LYPD8 24 110 108 CCDS HistoryNCBI Gene:646627Re-query CCDS DB by CCDS ID:73059.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73059.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000590317.4 ENSP00000466070.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000590317.4Link to Ensembl Protein Viewer:ENSP00000466070.2Re-query CCDS DB by Nucleotide ID:ENST00000590317Re-query CCDS DB by Protein ID:ENSP00000466070
Original member Current member NCBI NM_001085474.2 NP_001078943.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001085474.2Link to Protein Sequence:NP_001078943.2Re-query CCDS DB by Nucleotide ID:NM_001085474Re-query CCDS DB by Protein ID:NP_001078943Link to BLAST:NP_001078943.2
Original member Current member NCBI NM_001291283.2 NP_001278212.2 Accepted alive Link to Nucleotide Sequence:NM_001291283.2Link to Protein Sequence:NP_001278212.2Re-query CCDS DB by Nucleotide ID:NM_001291283Re-query CCDS DB by Protein ID:NP_001278212Link to BLAST:NP_001278212.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078943.2 237 Q6UX82 237 100% 0 0
NP_001278212.2 237 Q6UX82 237 100% 0 0

Chromosomal Locations for CCDS 73059.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 248739611 248739849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 248745142 248745279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 248748289 248748453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 248750524 248750643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 248751030 248751081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGAAGGGCATCCTCGTTGCTGGTATCACTGCAGTGCTTGTTGCAGCTGTAGAATCTCTGAGCTGCGTGC
AGTGTAATTCATGGGAAAAATCCTGTGTCAACAGCATTGCCTCTGAATGTCCCTCACATGCCAACACCAG
CTGTATCAGCTCCTCAGCCAGCTCCTCTCTAGAGACACCAGTCAGATTATACCAGAATATGTTCTGCTCA
GCGGAGAACTGCAGTGAGGAGACACACATTACAGCCTTCACTGTCCACGTGTCTGCTGAAGAACACTTTC
ATTTTGTAAGCCAGTGCTGCCAAGGAAAGGAATGCAGCAACACCAGCGATGCCCTGGACCCTCCCCTGAA
GAACGTGTCCAGCAACGCAGAGTGCCCTGCTTGTTATGAATCTAATGGAACTTCCTGTCATGGGAAGCCC
TGGAAATGCTATGAAGAAGAACAGTGTGTCTTTCTAGTTGCAGAACTTAAGAATGACATTGAGTCTAAGA
GTCTCGTGCTGAAAGGCTGTTCCAACGTCAGTAACGCCACCTGTCAGTTCCTGTCTGGTGAAAACAAGAC
TCTTGGAGGAGTCATCTTTCGAAAGTTTGAGTGTGCAAATGTAAACAGCTTAACCCCCACGTCTGCACCA
ACCACTTCCCACAACGTGGGCTCCAAAGCTTCCCTCTACCTCTTGGCCCTTGCCAGCCTCCTTCTTCGGG
GACTGCTGCCCTGA

Translation (237 aa):
MKGILVAGITAVLVAAVESLSCVQCNSWEKSCVNSIASECPSHANTSCISSSASSSLETPVRLYQNMFCS
AENCSEETHITAFTVHVSAEEHFHFVSQCCQGKECSNTSDALDPPLKNVSSNAECPACYESNGTSCHGKP
WKCYEEEQCVFLVAELKNDIESKSLVLKGCSNVSNATCQFLSGENKTLGGVIFRKFECANVNSLTPTSAP
TTSHNVGSKASLYLLALASLLLRGLLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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