NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6166.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6166.2 Public Homo sapiens 8 CHCHD7 24 110 108 CCDS HistoryNCBI Gene:79145Re-query CCDS DB by CCDS ID:6166.2Re-query CCDS DB by GeneID:79145See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6166.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000523975.5 ENSP00000428917.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000523975.5Link to Ensembl Protein Viewer:ENSP00000428917.1Re-query CCDS DB by Nucleotide ID:ENST00000523975Re-query CCDS DB by Protein ID:ENSP00000428917
Original member Current member NCBI NM_024300.5 NP_077276.2 Accepted alive Link to Nucleotide Sequence:NM_024300.5Link to Protein Sequence:NP_077276.2Re-query CCDS DB by Nucleotide ID:NM_024300Re-query CCDS DB by Protein ID:NP_077276Link to BLAST:NP_077276.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077276.2 97 Q9BUK0-2 97 100% 0 0

Chromosomal Locations for CCDS 6166.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 56212870 56212889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 56214598 56214667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 56216433 56216531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 56217331 56217435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (294 nt):
ATGCACCAAACTCGAACTGGTAAGAAGACTGTTAGAATGCCCTCGGTAACACAGAGGCTGAGAGATCCTG
ACATAAATCCTTGTTTGTCGGAATCTGATGCTTCCACCAGATGTCTGGATGAAAATAACTATGACAGGGA
AAGGTGTTCCACTTACTTCTTGAGGTACAAAAACTGCCGGAGATTCTGGAATTCTATCGTGATGCAGAGA
AGAAAGAACGGAGTGAAGCCATTTATGCCTACGGCAGCAGAAAGAGATGAAATCTTGAGAGCAGTGGGAA
ATATGCCCTATTGA

Translation (97 aa):
MHQTRTGKKTVRMPSVTQRLRDPDINPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFWNSIVMQR
RKNGVKPFMPTAAERDEILRAVGNMPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH