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Report for CCDS1895.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1895.1 Public Homo sapiens 2 GMCL1 24 110 108 CCDS HistoryNCBI Gene:64395Re-query CCDS DB by CCDS ID:1895.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1895.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000282570.4 ENSP00000282570.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000282570.4Link to Ensembl Protein Viewer:ENSP00000282570.3Re-query CCDS DB by Nucleotide ID:ENST00000282570Re-query CCDS DB by Protein ID:ENSP00000282570
Original member Current member NCBI NM_178439.5 NP_848526.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178439.5Link to Protein Sequence:NP_848526.1Re-query CCDS DB by Nucleotide ID:NM_178439Re-query CCDS DB by Protein ID:NP_848526Link to BLAST:NP_848526.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848526.1 515 Q96IK5 515 100% 0 0

Chromosomal Locations for CCDS 1895.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 69829893 69830152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69837547 69837670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69839457 69839553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69840942 69841039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69843149 69843261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69844131 69844196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69847543 69847627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69849652 69849742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69854823 69854960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69861278 69861347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69864900 69864975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69869719 69869864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69871745 69871832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69878909 69879004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1548 nt):
ATGGGATCGTTGAGCAGCCGGGTGCTGCGCCAGCCAAGACCAGCCCTTGCCCAGCAGGCGCAGGGTGCCA
GGGCGGGGGGCTCGGCCCGGAGGCCGGACACTGGAGACGATGCGGCGGGCCACGGATTCTGTTACTGTGC
GGGCAGCCACAAGCGCAAGCGGAGCAGCGGGTCCTTCTGCTACTGTCACCCTGACTCGGAGACGGACGAG
GATGAGGAGGAGGGGGACGAGCAGCAGCGGCTCCTCAACACCCCTCGAAGGAAAAAATTAAAGAGTACAT
CTAAATATATTTATCAAACATTATTTTTGAATGGTGAAAACAGTGACATTAAGATTTGTGCTCTAGGAGA
AGAATGGAGCTTACACAAAATATATTTATGTCAATCTGGCTACTTTTCTAGTATGTTCAGTGGTTCTTGG
AAAGAATCCAGCATGAATATTATTGAACTGGAGATTCCTGACCAGAACATTGATGTAGAAGCACTGCAGG
TTGCATTTGGTTCACTGTATCGAGATGATGTCTTGATAAAGCCCAGTCGAGTTGTTGCCATTTTGGCAGC
AGCTTGTTTGCTGCAGTTGGACGGTTTAATACAGCAGTGTGGTGAGACAATGAAGGAAACAGTTAATGTG
AAAACTGTATGTGGCTATTACACATCAGCAGGGACCTATGGATTAGATTCTGTAAAGAAAAAGTGCCTTG
AATGGCTTCTAAACAATTTGATGACTCACCAGAATGTTGAACTTTTTAAAGAACTCAGTATAAATGTCAT
GAAACAGCTCATTGGTTCATCTAACTTATTTGTGATGCAAGTGGAGATGGATATATACACTGCTCTAAAA
AAGTGGATGTTCCTTCAACTTGTGCCTTCTTGGAATGGATCTTTAAAACAGCTTTTGACAGAAACAGATG
TCTGGTTTTCTAAACAGAGGAAAGATTTTGAAGGTATGGCCTTTCTTGAAACTGAACAAGGAAAACCATT
TGTGTCAGTATTCAGACATTTAAGGTTACAATATATTATCAGTGATCTGGCTTCTGCAAGAATTATTGAA
CAAGATGCTGTAGTACCTTCAGAATGGCTCTCTTCTGTGTATAAACAGCAGTGGTTTGCTATGCTGCGGG
CAGAACAGGACAGTGAGGTGGGGCCTCAAGAAATCAATAAAGAAGAACTAGAGGGAAACAGCATGAGGTG
TGGTAGAAAGCTTGCCAAAGATGGTGAATACTGCTGGCGTTGGACAGGTTTTAACTTCGGCTTCGACCTA
CTTGTAACTTACACCAATCGATACATCATTTTCAAACGCAATACACTGAATCAGCCATGTAGCGGATCTG
TCAGTTTACAGCCTCGAAGGAGCATAGCATTTAGATTACGTTTGGCTTCTTTTGATAGTAGTGGAAAACT
AATATGTAGTAGAACAACTGGCTATCAAATACTTACACTTGAAAAGGATCAGGAACAAGTGGTGATGAAC
TTGGACAGCAGGCTTCTGATCTTCCCTTTATATATCTGCTGTAACTTCTTGTATATATCACCAGAAAAAA
AGAATTGA

Translation (515 aa):
MGSLSSRVLRQPRPALAQQAQGARAGGSARRPDTGDDAAGHGFCYCAGSHKRKRSSGSFCYCHPDSETDE
DEEEGDEQQRLLNTPRRKKLKSTSKYIYQTLFLNGENSDIKICALGEEWSLHKIYLCQSGYFSSMFSGSW
KESSMNIIELEIPDQNIDVEALQVAFGSLYRDDVLIKPSRVVAILAAACLLQLDGLIQQCGETMKETVNV
KTVCGYYTSAGTYGLDSVKKKCLEWLLNNLMTHQNVELFKELSINVMKQLIGSSNLFVMQVEMDIYTALK
KWMFLQLVPSWNGSLKQLLTETDVWFSKQRKDFEGMAFLETEQGKPFVSVFRHLRLQYIISDLASARIIE
QDAVVPSEWLSSVYKQQWFAMLRAEQDSEVGPQEINKEELEGNSMRCGRKLAKDGEYCWRWTGFNFGFDL
LVTYTNRYIIFKRNTLNQPCSGSVSLQPRRSIAFRLRLASFDSSGKLICSRTTGYQILTLEKDQEQVVMN
LDSRLLIFPLYICCNFLYISPEKKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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