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Report for CCDS5671.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5671.2 Public Homo sapiens 7 ZSCAN25 24 110 108 CCDS HistoryNCBI Gene:221785Re-query CCDS DB by CCDS ID:5671.2Re-query CCDS DB by GeneID:221785See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 5671.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334715.7 ENSP00000334800.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000334715.7Link to Ensembl Protein Viewer:ENSP00000334800.3Re-query CCDS DB by Nucleotide ID:ENST00000334715Re-query CCDS DB by Protein ID:ENSP00000334800
Original member Current member EBI ENST00000394152.7 ENSP00000377708.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394152.7Link to Ensembl Protein Viewer:ENSP00000377708.2Re-query CCDS DB by Nucleotide ID:ENST00000394152Re-query CCDS DB by Protein ID:ENSP00000377708
Original member Current member NCBI NM_001350979.2 NP_001337908.1 Accepted alive Link to Nucleotide Sequence:NM_001350979.2Link to Protein Sequence:NP_001337908.1Re-query CCDS DB by Nucleotide ID:NM_001350979Re-query CCDS DB by Protein ID:NP_001337908Link to BLAST:NP_001337908.1
Original member Current member NCBI NM_001350980.2 NP_001337909.1 Accepted alive Link to Nucleotide Sequence:NM_001350980.2Link to Protein Sequence:NP_001337909.1Re-query CCDS DB by Nucleotide ID:NM_001350980Re-query CCDS DB by Protein ID:NP_001337909Link to BLAST:NP_001337909.1
Original member Current member NCBI NM_145115.3 NP_660090.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145115.3Link to Protein Sequence:NP_660090.2Re-query CCDS DB by Nucleotide ID:NM_145115Re-query CCDS DB by Protein ID:NP_660090Link to BLAST:NP_660090.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001337908.1 544 Q6NSZ9-1 544 100% 0 0
NP_001337909.1 544 Q6NSZ9-1 544 100% 0 0
NP_660090.2 544 Q6NSZ9-1 544 100% 0 0

Chromosomal Locations for CCDS 5671.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 99619607 99619993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99621373 99621574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99622549 99622640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99624057 99624180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99629191 99630020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1635 nt):
ATGCTTAAAGAGCATCCAGAGATGGCGGAAGCTCCTCAGCAGCAGTTGGGTATTCCTGTGGTGAAACTGG
AGAAAGAGTTGCCATGGGGCAGAGGAAGGGAGGACCCTAGTCCAGAGACTTTTCGGCTGAGGTTTCGGCA
GTTCCGCTACCAGGAGGCAGCTGGACCCCAGGAAGCTCTTAGGGAGCTCCAGGAGCTCTGTCGTCGGTGG
CTGAGGCCCGAGTTGCACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTCACTATCC
TGCCCCGCGAGTTCTACGCCTGGATCCGGGAGCATGGCCCAGAGAGTGGCAAGGCCCTGGCCGCCATGGT
GGAGGACCTGACAGAAAGAGCACTGGAGGCCAAGGCGGTTCCATGCCACAGGCAGGGAGAGCAGGAGGAA
ACAGCACTTTGCAGAGGCGCTTGGGAGCCAGGCATCCAGCTGGGGCCAGTGGAGGTCAAGCCTGAATGGG
GGATGCCCCCTGGGGAAGGAGTTCAAGGTCCAGACCCAGGTACCGAGGAGCAGCTCAGTCAGGACCCTGG
AGATGAGACACGGGCCTTCCAGGAGCAAGCACTACCTGTTCTGCAGGCGGGTCCTGGCCTCCCCGCAGTG
AATCCCAGAGACCAAGAGATGGCAGCTGGGTTCTTTACTGCTGGATCGCAGGGGTTGGGGCCATTTAAAG
ATATGGCCCTGGCCTTCCCTGAGGAGGAGTGGAGGCATGTGACCCCAGCCCAGATAGACTGCTTTGGGGA
GTATGTGGAACCGCAGGACTGCAGGGTCTCTCCAGGCGGTGGGAGCAAGGAAAAGGAGGCAAAACCCCCA
CAGGAAGACCTGAAAGGGGCGCTGGTGGCACTGACATCAGAGAGGTTTGGGGAAGCCTCTCTCCAGGGCC
CTGGGCTCGGAAGGGTCTGTGAGCAGGAGCCTGGTGGCCCTGCAGGCAGTGCGCCTGGGCTTCCTCCTCC
CCAGCACGGTGCCATCCCCCTGCCTGACGAAGTCAAAACCCACAGCTCCTTCTGGAAGCCTTTCCAGTGC
CCTGAGTGTGGGAAAGGATTCAGTCGGAGCTCCAATCTCGTCAGGCACCAGCGAACCCACGAAGAGAAGT
CTTATGGCTGTGTGGAGTGTGGGAAGGGCTTTACCCTGAGAGAATACCTGATGAAGCACCAGAGAACCCA
CCTGGGAAAGAGGCCCTACGTGTGCAGCGAGTGCTGGAAAACCTTCAGCCAGAGACACCACCTGGAGGTG
CACCAGCGCAGCCACACTGGGGAGAAGCCCTACAAGTGCGGGGACTGCTGGAAGAGCTTCAGCCGCAGGC
AGCACCTGCAGGTGCACCGGAGGACGCACACCGGGGAGAAGCCCTACACCTGCGAGTGTGGCAAGAGCTT
CAGCAGGAATGCCAATCTGGCGGTGCACCGGCGTGCCCACACTGGCGAGAAGCCATATGGGTGCCAGGTG
TGCGGGAAGCGGTTCAGCAAAGGGGAGCGGCTGGTCCGACACCAGAGAATCCATACAGGGGAGAAGCCCT
ACCACTGTCCTGCCTGCGGGCGAAGCTTCAACCAGAGGTCCATCCTCAACCGGCACCAGAAGACCCAGCA
CCGCCAGGAGCCGCTGGTGCAGTGA

Translation (544 aa):
MLKEHPEMAEAPQQQLGIPVVKLEKELPWGRGREDPSPETFRLRFRQFRYQEAAGPQEALRELQELCRRW
LRPELHTKEQILELLVLEQFLTILPREFYAWIREHGPESGKALAAMVEDLTERALEAKAVPCHRQGEQEE
TALCRGAWEPGIQLGPVEVKPEWGMPPGEGVQGPDPGTEEQLSQDPGDETRAFQEQALPVLQAGPGLPAV
NPRDQEMAAGFFTAGSQGLGPFKDMALAFPEEEWRHVTPAQIDCFGEYVEPQDCRVSPGGGSKEKEAKPP
QEDLKGALVALTSERFGEASLQGPGLGRVCEQEPGGPAGSAPGLPPPQHGAIPLPDEVKTHSSFWKPFQC
PECGKGFSRSSNLVRHQRTHEEKSYGCVECGKGFTLREYLMKHQRTHLGKRPYVCSECWKTFSQRHHLEV
HQRSHTGEKPYKCGDCWKSFSRRQHLQVHRRTHTGEKPYTCECGKSFSRNANLAVHRRAHTGEKPYGCQV
CGKRFSKGERLVRHQRIHTGEKPYHCPACGRSFNQRSILNRHQKTQHRQEPLVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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