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Report for CCDS44456.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44456.1 Public Homo sapiens 10 LIPN 24 110 108 CCDS HistoryNCBI Gene:643418Re-query CCDS DB by CCDS ID:44456.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44456.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000404459.2 ENSP00000383923.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000404459.2Link to Ensembl Protein Viewer:ENSP00000383923.1Re-query CCDS DB by Nucleotide ID:ENST00000404459Re-query CCDS DB by Protein ID:ENSP00000383923
Original member Current member NCBI NM_001102469.2 NP_001095939.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001102469.2Link to Protein Sequence:NP_001095939.1Re-query CCDS DB by Nucleotide ID:NM_001102469Re-query CCDS DB by Protein ID:NP_001095939Link to BLAST:NP_001095939.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001095939.1 398 Q5VXI9 398 100% 0 0

Chromosomal Locations for CCDS 44456.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 88761406 88761513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88762188 88762305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88764410 88764608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88766269 88766378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88768792 88768928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88770845 88770991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88774473 88774544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88775092 88775163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88778009 88778242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1197 nt):
ATGATGTGGCTGCTTTTAACAACAACTTGTTTGATCTGTGGAACTTTAAATGCTGGTGGATTCCTTGATT
TGGAAAATGAAGTGAATCCTGAGGTGTGGATGAATACTAGTGAAATCATCATCTACAATGGCTACCCCAG
TGAAGAGTATGAAGTCACCACTGAAGATGGGTATATACTCCTTGTCAACAGAATTCCTTATGGGCGAACA
CATGCTAGGAGCACAGGTCCCCGGCCAGTTGTGTATATGCAGCATGCCCTGTTTGCAGACAATGCCTACT
GGCTTGAGAATTATGCTAATGGAAGCCTTGGATTCCTTCTAGCAGATGCAGGTTATGATGTATGGATGGG
AAACAGTCGGGGAAACACTTGGTCAAGAAGACACAAAACACTCTCAGAGACAGATGAGAAATTCTGGGCC
TTTAGTTTTGATGAAATGGCCAAATATGATCTCCCAGGAGTAATAGACTTCATTGTAAATAAAACTGGTC
AGGAGAAATTGTATTTCATTGGACATTCACTTGGCACTACAATAGGGTTTGTAGCCTTTTCCACCATGCC
TGAACTGGCACAAAGAATCAAAATGAATTTTGCCTTGGGTCCTACGATCTCATTCAAATATCCCACGGGC
ATTTTTACCAGGTTTTTTCTACTTCCAAATTCCATAATCAAGGCTGTTTTTGGTACCAAAGGTTTCTTTT
TAGAAGATAAGAAAACGAAGATAGCTTCTACCAAAATCTGCAACAATAAGATACTCTGGTTGATATGTAG
CGAATTTATGTCCTTATGGGCTGGATCCAACAAGAAAAATATGAATCAGAGTCGAATGGATGTGTATATG
TCACATGCTCCCACTGGTTCATCAGTACACAACATTCTGCATATAAAACAGCTTTACCACTCTGATGAAT
TCAGAGCTTATGACTGGGGAAATGACGCTGATAATATGAAACATTACAATCAGAGTCATCCCCCTATATA
TGACCTGACTGCCATGAAAGTGCCTACTGCTATTTGGGCTGGTGGACATGATGTCCTCGTAACACCCCAG
GATGTGGCCAGGATACTCCCTCAAATCAAGAGTCTTCATTACTTTAAGCTATTGCCAGATTGGAACCACT
TTGATTTTGTCTGGGGCCTCGATGCCCCTCAACGGATGTACAGTGAAATCATAGCTTTAATGAAGGCATA
TTCCTAA

Translation (398 aa):
MMWLLLTTTCLICGTLNAGGFLDLENEVNPEVWMNTSEIIIYNGYPSEEYEVTTEDGYILLVNRIPYGRT
HARSTGPRPVVYMQHALFADNAYWLENYANGSLGFLLADAGYDVWMGNSRGNTWSRRHKTLSETDEKFWA
FSFDEMAKYDLPGVIDFIVNKTGQEKLYFIGHSLGTTIGFVAFSTMPELAQRIKMNFALGPTISFKYPTG
IFTRFFLLPNSIIKAVFGTKGFFLEDKKTKIASTKICNNKILWLICSEFMSLWAGSNKKNMNQSRMDVYM
SHAPTGSSVHNILHIKQLYHSDEFRAYDWGNDADNMKHYNQSHPPIYDLTAMKVPTAIWAGGHDVLVTPQ
DVARILPQIKSLHYFKLLPDWNHFDFVWGLDAPQRMYSEIIALMKAYS


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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