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Report for CCDS42645.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42645.1 Public Homo sapiens 2 FAM110C 24 110 108 CCDS HistoryNCBI Gene:642273Re-query CCDS DB by CCDS ID:42645.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42645.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327669.5 ENSP00000328347.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000327669.5Link to Ensembl Protein Viewer:ENSP00000328347.4Re-query CCDS DB by Nucleotide ID:ENST00000327669Re-query CCDS DB by Protein ID:ENSP00000328347
Original member Current member NCBI NM_001077710.3 NP_001071178.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001077710.3Link to Protein Sequence:NP_001071178.2Re-query CCDS DB by Nucleotide ID:NM_001077710Re-query CCDS DB by Protein ID:NP_001071178Link to BLAST:NP_001071178.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001071178.2 321 Q1W6H9 321 100% 0 0

Chromosomal Locations for CCDS 42645.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 41608 41627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45440 46385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGCGCGCCCTGGCGGCCCTGAGCGCGCCCCCGAACGAGCGGCTCCTTCCCCGGGACCCCGCGGCTACCC
GGGACCCCGACGCCGCGCGGCCGGCGCGCAGGAGCGCAGTGGAGAGGCTGGCGGCGGATCGCGCCAAGTA
TGTGCGGGGTCGGCCGGGGACTGGCCGGGGCGTCGCTTCCGAGGGCAGCGGCCCGGGGGCGATCAAGTGC
CCGGGGAACGACCCTGGGCCCCCGGCCCGCGCCCCGGCCCCGGTGGCGCGCAGGGCTATTGCGCGGAAGC
CGTTGAGACCGGACTCGCTGATCATCTACCGGCAGAAATGCGAATTCGTGCGAGGATCGGGCGCCGACGG
CCCCAGGGCAAGCCTGGTGAAGAAGCTCTTCCAGGGGCCGGGTAAGGACAAGGCGCCGGTGCCCCGGACG
GGAGACGAGGGCAAGGCCGGGAACCCGGAGACGGTCCCGACCACTCCTGGCCCCGCGGCGGACCCCGCAA
TCCCCGAGACCCCAGCCCCAGCCGCGCGGTCCGCGGCGCCCTCCAGTGTCCCGGCCGCGCCCCCTGGGCC
AGAGCCGCGGGTGGTGAGGCGTCGGGGGCTGCAGCGCTCACAGTCGGACCTCAGCTCCCGCTATTCCGCT
GCCTTGGCCGAGTCTGACACCTTCTTCCAGTACTGCGGCCTGGACCCCGAGGTGGTGGAGGCCCTGGGGA
GGGAGAACTTCACCGCGGGGTCGGACTGTGTGACCCTCAAGGTGCGCAGCGTGAGCGTCGCCACCTCCGG
CAGCGGCTTCTCCCGGCACAGCGGCGGCGACGACGAGGGGCTGCAGGAGGAGGAGCTGATAGAGCAGGTG
CCCAGCACCACTTCGGTCATCGAGAGGAACGCCCGCATCATCAAGTGGCTGTACACCTGTAAGAAGGCCA
AGGAGACCCCCAGCCAGGAGCAGAGCCGGACCCGAGGAAGCAAACCTTCCCGATGA

Translation (321 aa):
MRALAALSAPPNERLLPRDPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGPGAIKC
PGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKKLFQGPGKDKAPVPRT
GDEGKAGNPETVPTTPGPAADPAIPETPAPAARSAAPSSVPAAPPGPEPRVVRRRGLQRSQSDLSSRYSA
ALAESDTFFQYCGLDPEVVEALGRENFTAGSDCVTLKVRSVSVATSGSGFSRHSGGDDEGLQEEELIEQV
PSTTSVIERNARIIKWLYTCKKAKETPSQEQSRTRGSKPSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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