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Report for CCDS3424.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3424.1 Public Homo sapiens 4 NCAPG 24 110 108 CCDS HistoryNCBI Gene:64151Re-query CCDS DB by CCDS ID:3424.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3424.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000251496.7 ENSP00000251496.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000251496.7Link to Ensembl Protein Viewer:ENSP00000251496.2Re-query CCDS DB by Nucleotide ID:ENST00000251496Re-query CCDS DB by Protein ID:ENSP00000251496
Original member Current member NCBI NM_022346.5 NP_071741.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022346.5Link to Protein Sequence:NP_071741.2Re-query CCDS DB by Nucleotide ID:NM_022346Re-query CCDS DB by Protein ID:NP_071741Link to BLAST:NP_071741.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071741.2 1015 Q9BPX3 1015 100% 0 0

Chromosomal Locations for CCDS 3424.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 17811078 17811188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17812221 17812424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17812917 17813145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17814853 17814998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17815274 17815358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17817261 17817453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17817939 17818088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17822983 17823123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17823647 17823770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17824968 17825057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17825382 17825561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17828278 17828388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17830997 17831116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17834299 17834523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17837159 17837340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17837627 17837801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17839676 17839837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17840071 17840209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17840607 17840693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17842310 17842379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 17843302 17843425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3048 nt):
ATGGGAGCGGAAAGGAGGCTGCTGTCGATTAAGGAGGCCTTTCGGCTGGCGCAGCAGCCGCACCAGAACC
AGGCGAAGCTGGTGGTGGCGCTGAGCCGCACCTACCGCACGATGGATGATAAGACAGTTTTTCATGAGGA
GTTCATTCATTACCTTAAATATGTTATGGTGGTCTATAAACGTGAACCAGCTGTGGAGAGGGTAATAGAA
TTTGCAGCAAAGTTTGTTACCTCATTTCACCAATCAGATATGGAAGATGATGAGGAAGAGGAAGATGGTG
GCCTTTTAAATTATTTGTTTACTTTTCTCTTAAAGTCTCATGAAGCAAACAGCAATGCAGTGAGATTTAG
AGTGTGCCTGCTCATAAACAAGCTTTTGGGAAGTATGCCAGAAAATGCTCAGATTGATGATGATGTGTTT
GATAAAATTAATAAAGCCATGCTTATTAGATTGAAAGATAAGATTCCAAATGTGAGAATACAGGCAGTTC
TGGCGCTTTCACGACTTCAGGATCCCAAGGATGATGAATGCCCAGTGGTTAATGCATATGCTACTTTGAT
TGAAAATGATTCAAATCCAGAAGTTAGACGGGCAGTGTTATCATGTATTGCACCATCAGCAAAGACTTTG
CCAAAAATTGTAGGGCGCACCAAGGATGTGAAAGAGGCTGTCAGAAAGCTGGCTTATCAGGTTTTAGCTG
AAAAGGTTCATATGAGAGCTATGTCCATTGCTCAGAGAGTAATGCTCCTTCAACAAGGTCTTAATGACAG
ATCAGATGCTGTGAAACAAGCTATGCAGAAGCATCTTCTTCAAGGCTGGTTACGGTTCTCTGAAGGAAAT
ATCTTAGAGTTGCTCCATCGGTTGGATGTAGAAAATTCTTCTGAAGTGGCAGTCTCTGTTCTCAATGCCT
TGTTTTCAATAACTCCTCTCAGTGAACTGGTGGGACTCTGTAAAAACAATGATGGCAGGAAATTGATTCC
AGTGGAAACATTAACTCCTGAAATTGCTTTGTATTGGTGTGCCCTTTGTGAATATTTGAAATCAAAAGGA
GATGAAGGTGAAGAATTTTTAGAGCAGATTTTGCCAGAGCCTGTAGTATATGCAGACTATTTATTGAGTT
ACATCCAGAGCATTCCAGTTGTTAATGAAGAACACAGAGGTGATTTTTCCTATATTGGAAATTTGATGAC
AAAAGAATTCATAGGTCAACAATTGATTCTAATTATTAAGTCTTTGGATACCAGTGAAGAAGGAGGAAGA
AAAAAACTGCTGGCTGTTTTACAGGAGATTCTTATTTTACCCACAATCCCAATATCCCTGGTTTCTTTTC
TTGTTGAAAGACTACTCCACATCATTATAGATGATAATAAGAGAACACAAATTGTTACAGAAATTATCTC
AGAGATTCGGGCGCCCATTGTTACTGTTGGTGTTAATAACGATCCAGCTGATGTAAGAAAGAAAGAACTC
AAGATGGCTGAAATAAAAGTTAAGCTTATCGAAGCCAAAGAAGCTTTGGAAAATTGCATTACCTTACAGG
ATTTTAATCGGGCATCAGAATTAAAAGAAGAAATAAAAGCATTAGAAGATGCCAGAATAAACCTTTTGAA
AGAGACAGAGCAACTTGAAATTAAAGAAGTCCACATAGAGAAGAATGATGCTGAAACATTGCAGAAATGT
CTTATTTTATGCTATGAACTGTTGAAGCAGATGTCCATTTCAACAGGCTTAAGTGCAACCATGAATGGAA
TCATCGAATCTTTGATTCTTCCTGGAATAATAAGTATTCATCCTGTTGTAAGAAACCTGGCTGTTTTATG
CTTGGGATGCTGTGGACTACAGAATCAGGATTTTGCAAGGAAACACTTCGTATTACTATTGCAGGTTTTG
CAAATTGATGATGTCACAATAAAAATAAGTGCTTTAAAGGCAATCTTTGACCAACTGATGACGTTCGGGA
TTGAACCATTTAAAACTAAAAAAATCAAAACACTTCATTGTGAAGGTACAGAAATAAACAGTGATGATGA
GCAAGAATCAAAAGAAGTTGAAGAGACTGCTACAGCTAAGAATGTTCTGAAACTCCTTTCTGATTTCTTA
GATAGTGAGGTATCTGAACTTAGGACTGGAGCTGCAGAAGGACTAGCCAAGCTGATGTTCTCTGGGCTTT
TGGTCAGCAGCAGGATTCTTTCTCGTCTTATTTTGTTATGGTACAATCCTGTGACTGAAGAGGATGTTCA
ACTTCGACATTGCCTAGGCGTGTTCTTCCCCGTGTTTGCTTATGCAAGCAGGACTAATCAGGAATGCTTT
GAAGAAGCTTTTCTTCCAACCCTGCAAACACTGGCCAATGCCCCTGCATCTTCTCCTTTAGCTGAAATTG
ATATCACAAATGTTGCTGAGTTACTTGTAGATTTGACAAGACCAAGTGGATTAAATCCTCAGGCCAAGAC
TTCCCAAGATTATCAGGCCTTAACAGTACATGACAATTTGGCTATGAAAATTTGCAATGAGATCTTAACA
AGTCCGTGCTCGCCAGAAATTCGAGTCTATACAAAAGCCTTGAGTTCTTTAGAACTCAGTAGCCATCTTG
CAAAAGATCTTCTGGTTCTATTGAATGAGATTCTGGAGCAAGTAAAAGATAGGACATGTCTGAGAGCTTT
GGAGAAAATCAAGATTCAGTTAGAAAAAGGAAATAAAGAATTTGGTGACCAAGCTGAAGCAGCACAGGAT
GCCACCTTGACTACAACTACTTTCCAAAATGAAGATGAAAAGAATAAAGAAGTATATATGACTCCACTCA
GGGGTGTAAAAGCAACCCAAGCATCAAAGTCTACTCAGCTAAAGACTAACAGAGGACAGAGAAAAGTGAC
AGTTTCAGCTAGGACGAACAGGAGGTGTCAGACTGCTGAAGCCGACTCTGAAAGTGATCATGAAGTTCCA
GAACCAGAATCAGAAATGAAGATGAGACTACCAAGACGAGCCAAAACCGCAGCACTAGAAAAAAGTAAAC
TTAACCTTGCCCAATTTCTCAATGAAGATCTAAGTTAG

Translation (1015 aa):
MGAERRLLSIKEAFRLAQQPHQNQAKLVVALSRTYRTMDDKTVFHEEFIHYLKYVMVVYKREPAVERVIE
FAAKFVTSFHQSDMEDDEEEEDGGLLNYLFTFLLKSHEANSNAVRFRVCLLINKLLGSMPENAQIDDDVF
DKINKAMLIRLKDKIPNVRIQAVLALSRLQDPKDDECPVVNAYATLIENDSNPEVRRAVLSCIAPSAKTL
PKIVGRTKDVKEAVRKLAYQVLAEKVHMRAMSIAQRVMLLQQGLNDRSDAVKQAMQKHLLQGWLRFSEGN
ILELLHRLDVENSSEVAVSVLNALFSITPLSELVGLCKNNDGRKLIPVETLTPEIALYWCALCEYLKSKG
DEGEEFLEQILPEPVVYADYLLSYIQSIPVVNEEHRGDFSYIGNLMTKEFIGQQLILIIKSLDTSEEGGR
KKLLAVLQEILILPTIPISLVSFLVERLLHIIIDDNKRTQIVTEIISEIRAPIVTVGVNNDPADVRKKEL
KMAEIKVKLIEAKEALENCITLQDFNRASELKEEIKALEDARINLLKETEQLEIKEVHIEKNDAETLQKC
LILCYELLKQMSISTGLSATMNGIIESLILPGIISIHPVVRNLAVLCLGCCGLQNQDFARKHFVLLLQVL
QIDDVTIKISALKAIFDQLMTFGIEPFKTKKIKTLHCEGTEINSDDEQESKEVEETATAKNVLKLLSDFL
DSEVSELRTGAAEGLAKLMFSGLLVSSRILSRLILLWYNPVTEEDVQLRHCLGVFFPVFAYASRTNQECF
EEAFLPTLQTLANAPASSPLAEIDITNVAELLVDLTRPSGLNPQAKTSQDYQALTVHDNLAMKICNEILT
SPCSPEIRVYTKALSSLELSSHLAKDLLVLLNEILEQVKDRTCLRALEKIKIQLEKGNKEFGDQAEAAQD
ATLTTTTFQNEDEKNKEVYMTPLRGVKATQASKSTQLKTNRGQRKVTVSARTNRRCQTAEADSESDHEVP
EPESEMKMRLPRRAKTAALEKSKLNLAQFLNEDLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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