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Report for CCDS19225.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19225.1 Public Mus musculus 5 Lrpap1 23 108 98 CCDS HistoryNCBI Gene:16976Re-query CCDS DB by CCDS ID:19225.1Re-query CCDS DB by GeneID:16976See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19225.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030986.14 ENSMUSP00000030986.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030986.14Link to Ensembl Protein Viewer:ENSMUSP00000030986.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030986Re-query CCDS DB by Protein ID:ENSMUSP00000030986
Original member Current member NCBI NM_013587.3 NP_038615.2 Accepted alive Link to Nucleotide Sequence:NM_013587.3Link to Protein Sequence:NP_038615.2Re-query CCDS DB by Nucleotide ID:NM_013587Re-query CCDS DB by Protein ID:NP_038615Link to BLAST:NP_038615.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038615.2 360 P55302 360 100% 0 0

Chromosomal Locations for CCDS 19225.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 35093324 35093386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35094850 35095026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35095976 35096058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35097531 35097689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35098153 35098273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35099157 35099278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35102395 35102539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35105479 35105691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGGCGCCTCGAAGAGAGAGGGTCTCTACGCTGCCCCGGCTCCAACTGCTAGTGCTGTTGTTGCTGCCGC
TGATGCTTGTGCCCCAGCCCATAGCAGGCCATGGCGGCAAGTACTCGCGAGAGAAGAACGAGCCGGAGAT
GGCCGCCAAGCGCGAGTCCGGGGAGGAGTTCCGCATGGAGAAGCTGAACCAGCTATGGGAGAAGGCCAAG
CGGCTTCATCTGTCTCCTGTGAGGCTGGCCGAGCTGCATTCTGACCTGAAGATACAAGAGAGGGATGAAC
TCAACTGGAAAAAGCTGAAGGTGGAAGGCTTGGATAAGGATGGGGAGAAAGAAGCAAAACTGATCCACAA
CCTCAACGTCATCCTGGCCAGATACGGACTGGATGGGAGGAAGGACGCCCAGATGGTGCACAGCAACGCC
CTCAATGAAGACACCCAGGATGAGCTGGGGGACCCCAGGCTGGAAAAGCTGTGGCACAAGGCAAAGACAT
CAGGGAAATTCTCCAGTGAAGAGCTGGACAAGCTGTGGAGAGAGTTTCTGCATTACAAAGAGAAGATCCA
GGAGTACAATGTGCTGCTAGACACACTGAGCAGAGCTGAAGAAGGTTATGAGAACCTTCTCAGTCCCTCG
GACATGGCCCACATCAAGAGCGACACCCTGATCAGCAAGCACAGTGAGCTGAAGGACAGACTGCGCAGTA
TCAACCAGGGCTTGGACCGCCTGCGGAAGGTCAGCCACCAGGGCTATGGCTCCACCACTGAGTTTGAAGA
GCCCCGGGTGATAGATCTGTGGGACCTGGCTCAGTCTGCCAACTTCACTGAGAAGGAACTGGAGTCATTC
AGGGAGGAGCTCAAGCACTTTGAGGCCAAAATTGAAAAGCACAACCACTACCAGAAGCAGCTGGAGATTT
CCCACCAGAAGCTGAAGCACGTGGAGAGCATCGGCGACCCCGAGCACATCAGCCGCAACAAGGAGAAATA
CGTGCTGCTGGAGGAGAAGACCAAGGAGCTGGGCTACAAGGTGAAGAAGCATCTACAGGACCTGTCTAGC
AGGGTCTCAAGGGCTCGGCACAATGAGCTCTGA

Translation (360 aa):
MAPRRERVSTLPRLQLLVLLLLPLMLVPQPIAGHGGKYSREKNEPEMAAKRESGEEFRMEKLNQLWEKAK
RLHLSPVRLAELHSDLKIQERDELNWKKLKVEGLDKDGEKEAKLIHNLNVILARYGLDGRKDAQMVHSNA
LNEDTQDELGDPRLEKLWHKAKTSGKFSSEELDKLWREFLHYKEKIQEYNVLLDTLSRAEEGYENLLSPS
DMAHIKSDTLISKHSELKDRLRSINQGLDRLRKVSHQGYGSTTEFEEPRVIDLWDLAQSANFTEKELESF
REELKHFEAKIEKHNHYQKQLEISHQKLKHVESIGDPEHISRNKEKYVLLEEKTKELGYKVKKHLQDLSS
RVSRARHNEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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