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Report for CCDS1008.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1008.1 Public Homo sapiens 1 S100A10 24 110 108 CCDS HistoryNCBI Gene:6281Re-query CCDS DB by CCDS ID:1008.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1008.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368809.1 ENSP00000357799.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368809.1Link to Ensembl Protein Viewer:ENSP00000357799.1Re-query CCDS DB by Nucleotide ID:ENST00000368809Re-query CCDS DB by Protein ID:ENSP00000357799
Original member Current member EBI ENST00000368811.8 ENSP00000357801.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368811.8Link to Ensembl Protein Viewer:ENSP00000357801.3Re-query CCDS DB by Nucleotide ID:ENST00000368811Re-query CCDS DB by Protein ID:ENSP00000357801
Original member Current member NCBI NM_002966.3 NP_002957.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002966.3Link to Protein Sequence:NP_002957.1Re-query CCDS DB by Nucleotide ID:NM_002966Re-query CCDS DB by Protein ID:NP_002957Link to BLAST:NP_002957.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002957.1 97 P60903 97 100% 0 0

Chromosomal Locations for CCDS 1008.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 151983163 151983324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151986099 151986230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (294 nt):
ATGCCATCTCAAATGGAACACGCCATGGAAACCATGATGTTTACATTTCACAAATTCGCTGGGGATAAAG
GCTACTTAACAAAGGAGGACCTGAGAGTACTCATGGAAAAGGAGTTCCCTGGATTTTTGGAAAATCAAAA
AGACCCTCTGGCTGTGGACAAAATAATGAAGGACCTGGACCAGTGTAGAGATGGCAAAGTGGGCTTCCAG
AGCTTCTTTTCCCTAATTGCGGGCCTCACCATTGCATGCAATGACTATTTTGTAGTACACATGAAGCAGA
AGGGAAAGAAGTAG

Translation (97 aa):
MPSQMEHAMETMMFTFHKFAGDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQ
SFFSLIAGLTIACNDYFVVHMKQKGKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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