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Report for CCDS1042.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1042.1 Public Homo sapiens 1 S100A4 24 110 108 CCDS HistoryNCBI Gene:6275Re-query CCDS DB by CCDS ID:1042.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1042.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354332.8 ENSP00000346294.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354332.8Link to Ensembl Protein Viewer:ENSP00000346294.4Re-query CCDS DB by Nucleotide ID:ENST00000354332Re-query CCDS DB by Protein ID:ENSP00000346294
Original member Current member EBI ENST00000368714.1 ENSP00000357703.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368714.1Link to Ensembl Protein Viewer:ENSP00000357703.1Re-query CCDS DB by Nucleotide ID:ENST00000368714Re-query CCDS DB by Protein ID:ENSP00000357703
Original member Current member EBI ENST00000368715.5 ENSP00000357704.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368715.5Link to Ensembl Protein Viewer:ENSP00000357704.1Re-query CCDS DB by Nucleotide ID:ENST00000368715Re-query CCDS DB by Protein ID:ENSP00000357704
Original member Current member EBI ENST00000368716.9 ENSP00000357705.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368716.9Link to Ensembl Protein Viewer:ENSP00000357705.4Re-query CCDS DB by Nucleotide ID:ENST00000368716Re-query CCDS DB by Protein ID:ENSP00000357705
Original member Current member NCBI NM_002961.3 NP_002952.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002961.3Link to Protein Sequence:NP_002952.1Re-query CCDS DB by Nucleotide ID:NM_002961Re-query CCDS DB by Protein ID:NP_002952Link to BLAST:NP_002952.1
Original member Current member NCBI NM_019554.3 NP_062427.1 Accepted alive Link to Nucleotide Sequence:NM_019554.3Link to Protein Sequence:NP_062427.1Re-query CCDS DB by Nucleotide ID:NM_019554Re-query CCDS DB by Protein ID:NP_062427Link to BLAST:NP_062427.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002952.1 101 P26447 101 100% 0 0
NP_062427.1 101 P26447 101 100% 0 0

Chromosomal Locations for CCDS 1042.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 153543759 153543923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153544654 153544794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (306 nt):
ATGGCGTGCCCTCTGGAGAAGGCCCTGGATGTGATGGTGTCCACCTTCCACAAGTACTCGGGCAAAGAGG
GTGACAAGTTCAAGCTCAACAAGTCAGAACTAAAGGAGCTGCTGACCCGGGAGCTGCCCAGCTTCTTGGG
GAAAAGGACAGATGAAGCTGCTTTCCAGAAGCTGATGAGCAACTTGGACAGCAACAGGGACAACGAGGTG
GACTTCCAAGAGTACTGTGTCTTCCTGTCCTGCATCGCCATGATGTGTAACGAATTCTTTGAAGGCTTCC
CAGATAAGCAGCCCAGGAAGAAATGA

Translation (101 aa):
MACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEV
DFQEYCVFLSCIAMMCNEFFEGFPDKQPRKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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