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Report for CCDS38951.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38951.1 Public Mus musculus 4 Pramel14 23 108 98 CCDS HistoryNCBI Gene:626943Re-query CCDS DB by CCDS ID:38951.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 38951.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105762.1 ENSMUSP00000101388.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105762.1Link to Ensembl Protein Viewer:ENSMUSP00000101388.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105762Re-query CCDS DB by Protein ID:ENSMUSP00000101388
Original member Current member NCBI NM_001085540.2 NP_001079009.1 Accepted alive Link to Nucleotide Sequence:NM_001085540.2Link to Protein Sequence:NP_001079009.1Re-query CCDS DB by Nucleotide ID:NM_001085540Re-query CCDS DB by Protein ID:NP_001079009Link to BLAST:NP_001079009.1

Chromosomal Locations for CCDS 38951.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 143991444 143992011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143992934 143993506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143994083 143994369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGGACTTGGAAGCCCCACCCACACTCCTGCAGCTGGCTGCACAGTGCACAGTGAGGAAGGAGGTGCTGA
CCATCTCTGTTCTGCAGAACCTACCAATGAAGCTCTTTCCACCACTATTCAAGGAGGCTGACATTCTGAG
AAAAGCAAAGATGATTAAACTCCTGGTGGAGTACTGGCCCTATCCTAGCCTTCTTGTTGGGTTGCTGATA
GATAAAACCAACTTGGAGACTTTCCAGGCTATACTGGAGGGAGTTGGCACATGGCTGAAACGGAAGTATC
GTCCCAGGATGGGGAAGCTTCAAGTGGTTGACTTGAGGAATGGACACCATGACTTCTGGGATATGCTGGC
TGGAAGAGAGGGTGGAGATCAGTTAGTAGAAACTATGCCTGAGAAGCAAGAAGTGGAGGGCCACTCAAGG
AGGCAGCGTTTGAGGGTGTTCAGTGACCTTTCCTTCAAGTCTTCTCGGCATGAAGATAAACAGCAAACAC
ATTTGTTGCAGTGGGCAAAGGACAGAGAGGGTTTCTTGCATCTGTGCTGCGAGAAGTTGGAAATTGGAGC
ATTAGGAGTGTCCAAGGTCAAGAAGGTGTTAAAGCTTTTACAGCCAGAGTTCATCAAGGAGTTGGAACTG
AATACAGTGGGGAATCTGTCCAAATTGACAAAACTTGTACCTTGCATCAGCAAGATGAGAAATCTTCAGA
AACTCATGCTAGTACGCATCTTTGGAAGACATACTTACACCCCCTTGGAAGAGAGGAACGTCACCAAGAT
CCTTTCTTTGTTCCCCAAACTCAGCTATCTCCAGCATCTCACTATTGATGATGTCTATTTTCTCAGAGAC
CACATGAATGAGTTGTTCAGGTACCTGGAGGCTCCCTTGTTGTCCCTGACCATCACTCTGTGCCAGATCT
CTCAGTCAGACTTGGAGTCATTTTCCCAGCATTGGAACTACGGTCAGCTTAAACATCTGTGCTTGAAAGG
TGTCTCTTTATCTACATTGAATGTCACACCTCTCAAATTTTTCTTAGAGAGTGTTGCAGATACTCTGCAG
ACTCTAGAATTAGAAGACTGTAGGATGAAGGACTCTCACCTCAGGATCCTTCTGCCTGCCTTGACCAAAT
GCACCCGTCTCACTAGCATCAATTTTTATGACAATAACATCTCCAGGGATGTTCTGCAGGATCTTCTGCA
CCGCACAGCCAACATGAGCCAGCTGACCATGGAACTGTACCCTGCCCCAGTAGAGGTCTATAATGAGTGG
AGTTATGTTCAAGTAGAGAGATTTTCTCAGCTTTGTGCTGAGCTCATGAACACACTCATAACTGTAAGAC
GGCCCAAGTCAGTCTGCTTTGGTACCTATTCCTGTTATGACTGCGATACACATTGTATCTATGGAAATCA
GACCACATTTTGTGAATGCTTGGAGTAA

Translation (475 aa):
MDLEAPPTLLQLAAQCTVRKEVLTISVLQNLPMKLFPPLFKEADILRKAKMIKLLVEYWPYPSLLVGLLI
DKTNLETFQAILEGVGTWLKRKYRPRMGKLQVVDLRNGHHDFWDMLAGREGGDQLVETMPEKQEVEGHSR
RQRLRVFSDLSFKSSRHEDKQQTHLLQWAKDREGFLHLCCEKLEIGALGVSKVKKVLKLLQPEFIKELEL
NTVGNLSKLTKLVPCISKMRNLQKLMLVRIFGRHTYTPLEERNVTKILSLFPKLSYLQHLTIDDVYFLRD
HMNELFRYLEAPLLSLTITLCQISQSDLESFSQHWNYGQLKHLCLKGVSLSTLNVTPLKFFLESVADTLQ
TLELEDCRMKDSHLRILLPALTKCTRLTSINFYDNNISRDVLQDLLHRTANMSQLTMELYPAPVEVYNEW
SYVQVERFSQLCAELMNTLITVRRPKSVCFGTYSCYDCDTHCIYGNQTTFCECLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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