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Report for CCDS28557.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28557.1 Public Mus musculus 17 Cuta 23 108 98 CCDS HistoryNCBI Gene:67675Re-query CCDS DB by CCDS ID:28557.1Re-query CCDS DB by GeneID:67675See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28557.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025027.9 ENSMUSP00000025027.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025027.9Link to Ensembl Protein Viewer:ENSMUSP00000025027.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000025027Re-query CCDS DB by Protein ID:ENSMUSP00000025027
Original member Current member NCBI NM_026307.3 NP_080583.3 Accepted alive Link to Nucleotide Sequence:NM_026307.3Link to Protein Sequence:NP_080583.3Re-query CCDS DB by Nucleotide ID:NM_026307Re-query CCDS DB by Protein ID:NP_080583Link to BLAST:NP_080583.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080583.3 177 Q9CQ89-1 177 100% 0 0

Chromosomal Locations for CCDS 28557.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 26938050 26938176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26938418 26938467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26938572 26938617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26938727 26938786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26938884 26939092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26939317 26939358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (534 nt):
ATGAACTGGGGGCGGGCGCCCGGCGTCTTGCTCGGCGGAGGGGCCACTCTGCTCCTGTCGTTTCTTTGGA
TGCCAGCGCTACTGCCGGTGGCTTCCCGCCTTCTGTTGCTACCCCGAGCTCTGCTGTCAATGGCTTCTGG
AAGCCCTCCGTCCCAGCCCCCTCCGGCCTCGGGCTCCGGCTACGTTCCAGGATCAGTCTCTGCAGCCTTT
GTCACTTGTCCCAACGAAAAAGTCGCCAAGGAGATCGCCAGGGCAGTGGTAGAGAAGCGTCTGGCAGCCT
GCGTCAACCTCATCCCGCAGATCACATCCATCTATGAATGGAAAGGAAAGATCGAGGAAGATAGTGAGGT
GCTGATGATGATTAAAACCCAAAGCTCCCTGGTCCCTGCTCTGACAGAGTTTGTTCGATCTGTGCACCCT
TATGAAGTGGCCGAAGTGATTGCACTGCCTGTGGAGCAGGGAAATCCCCCGTACCTGCACTGGGTGCACC
AGGTCACAGAATCGGTTTCAAATTCTGGCACAGCCCTACCATGA

Translation (177 aa):
MNWGRAPGVLLGGGATLLLSFLWMPALLPVASRLLLLPRALLSMASGSPPSQPPPASGSGYVPGSVSAAF
VTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTEFVRSVHP
YEVAEVIALPVEQGNPPYLHWVHQVTESVSNSGTALP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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