NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11449.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11449.1 Public Homo sapiens 17 RPL27 24 110 108 CCDS HistoryNCBI Gene:6155Re-query CCDS DB by CCDS ID:11449.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11449.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253788.12 ENSP00000253788.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000253788.12Link to Ensembl Protein Viewer:ENSP00000253788.5Re-query CCDS DB by Nucleotide ID:ENST00000253788Re-query CCDS DB by Protein ID:ENSP00000253788
Original member Current member EBI ENST00000589913.6 ENSP00000464813.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000589913.6Link to Ensembl Protein Viewer:ENSP00000464813.1Re-query CCDS DB by Nucleotide ID:ENST00000589913Re-query CCDS DB by Protein ID:ENSP00000464813
Original member Current member EBI ENST00000589037.5 ENSP00000467587.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000589037.5Link to Ensembl Protein Viewer:ENSP00000467587.1Re-query CCDS DB by Nucleotide ID:ENST00000589037Re-query CCDS DB by Protein ID:ENSP00000467587
Original member Current member NCBI NM_000988.5 NP_000979.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000988.5Link to Protein Sequence:NP_000979.1Re-query CCDS DB by Nucleotide ID:NM_000988Re-query CCDS DB by Protein ID:NP_000979Link to BLAST:NP_000979.1
Original member Current member NCBI NM_001349921.2 NP_001336850.1 Accepted alive Link to Nucleotide Sequence:NM_001349921.2Link to Protein Sequence:NP_001336850.1Re-query CCDS DB by Nucleotide ID:NM_001349921Re-query CCDS DB by Protein ID:NP_001336850Link to BLAST:NP_001336850.1
Original member Current member NCBI NM_001349922.2 NP_001336851.1 Accepted alive Link to Nucleotide Sequence:NM_001349922.2Link to Protein Sequence:NP_001336851.1Re-query CCDS DB by Nucleotide ID:NM_001349922Re-query CCDS DB by Protein ID:NP_001336851Link to BLAST:NP_001336851.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000979.1 136 P61353 136 100% 0 0
NP_001336850.1 136 P61353 136 100% 0 0
NP_001336851.1 136 P61353 136 100% 0 0

Chromosomal Locations for CCDS 11449.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 42998751 42998831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42999933 43000102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43002673 43002783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 43002872 43002920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (411 nt):
ATGGGCAAGTTCATGAAACCTGGGAAGGTGGTGCTTGTCCTGGCTGGACGCTACTCCGGACGCAAAGCTG
TCATCGTGAAGAACATTGATGATGGCACCTCAGATCGCCCCTACAGCCATGCTCTGGTGGCTGGAATTGA
CCGCTACCCCCGCAAAGTGACAGCTGCCATGGGCAAGAAGAAGATCGCCAAGAGATCAAAGATAAAATCT
TTTGTGAAAGTGTATAACTACAATCACCTAATGCCCACAAGGTACTCTGTGGATATCCCCTTGGACAAAA
CTGTCGTCAATAAGGATGTCTTCAGAGATCCTGCTCTTAAACGCAAGGCCCGACGGGAGGCCAAGGTCAA
GTTTGAAGAGAGATACAAGACAGGCAAGAACAAGTGGTTCTTCCAGAAACTGCGGTTTTAG

Translation (136 aa):
MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKS
FVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH