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Report for CCDS15462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15462.1 Public Mus musculus 1 Pbx1 23 108 98 CCDS HistoryNCBI Gene:18514Re-query CCDS DB by CCDS ID:15462.1Re-query CCDS DB by GeneID:18514See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15462.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072863.5 ENSMUSP00000072640.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072863.5Link to Ensembl Protein Viewer:ENSMUSP00000072640.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000072863Re-query CCDS DB by Protein ID:ENSMUSP00000072640
Original member Current member EBI ENSMUST00000176790.7 ENSMUSP00000134925.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176790.7Link to Ensembl Protein Viewer:ENSMUSP00000134925.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176790Re-query CCDS DB by Protein ID:ENSMUSP00000134925
Original member Current member EBI ENSMUST00000188912.6 ENSMUSP00000140606.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188912.6Link to Ensembl Protein Viewer:ENSMUSP00000140606.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188912Re-query CCDS DB by Protein ID:ENSMUSP00000140606
Original member Current member NCBI NM_001291508.1 NP_001278437.1 Accepted alive Link to Nucleotide Sequence:NM_001291508.1Link to Protein Sequence:NP_001278437.1Re-query CCDS DB by Nucleotide ID:NM_001291508Re-query CCDS DB by Protein ID:NP_001278437Link to BLAST:NP_001278437.1
Original member Current member NCBI NM_008783.3 NP_032809.1 Accepted alive Link to Nucleotide Sequence:NM_008783.3Link to Protein Sequence:NP_032809.1Re-query CCDS DB by Nucleotide ID:NM_008783Re-query CCDS DB by Protein ID:NP_032809Link to BLAST:NP_032809.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278437.1 347 P41778-2 347 100% 0 0
NP_032809.1 347 P41778-2 347 100% 0 0

Chromosomal Locations for CCDS 15462.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 168183573 168183619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168191278 168191437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168195748 168195883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168203347 168203537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168209351 168209595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168427869 168427942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168431314 168431504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGGACGAGCAGCCGAGGCTGATGCATTCCCACGCTGGGGTCGGGATGGCCGGACACCCCGGCCTGTCCC
AGCACTTGCAGGATGGGGCCGGAGGGACCGAGGGGGAGGGCGGGAGGAAGCAGGACATCGGGGACATTTT
ACAGCAAATTATGACCATCACAGACCAGAGTTTGGATGAAGCGCAGGCCAGAAAACATGCTTTAAACTGC
CACAGAATGAAGCCTGCCTTGTTTAATGTGTTGTGTGAAATCAAAGAAAAAACAGTTTTGAGTATTCGGG
GAGCCCAAGAAGAGGAGCCCACAGACCCCCAGCTCATGCGACTGGACAACATGCTGCTAGCAGAAGGGGT
GGCGGGGCCTGAGAAGGGCGGAGGCTCGGCAGCGGCGGCGGCGGCAGCGGCAGCTTCTGGGGGTGCAGGT
TCAGACAACTCAGTGGAGCATTCCGACTACAGAGCCAAACTCTCACAGATCAGACAAATCTACCACACAG
AGCTGGAGAAGTATGAGCAGGCATGCAATGAATTCACCACCCACGTGATGAACCTCCTTCGAGAGCAAAG
CCGGACCAGGCCCATCTCTCCGAAGGAGATCGAGCGGATGGTGAGCATCATCCACCGCAAGTTCAGCTCC
ATCCAGATGCAGCTGAAACAGAGCACGTGCGAGGCCGTCATGATCCTGCGCTCCCGGTTCCTGGATGCGA
GGCGGAAGAGACGGAATTTCAACAAGCAAGCCACAGAAATTCTGAATGAATATTTCTATTCCCATCTCAG
CAACCCTTACCCCAGTGAGGAAGCCAAAGAGGAGTTAGCCAAGAAGTGCGGCATCACAGTCTCCCAGGTA
TCAAACTGGTTTGGAAATAAGCGAATCCGGTACAAGAAGAACATAGGTAAATTTCAAGAGGAAGCCAATA
TTTATGCTGCCAAAACGGCTGTCACAGCCACCAATGTGTCAGCCCATGGAAGCCAAGCTAACTCGCCCTC
TACTCCCAACTCAGCGGGTGGATACCCTTCGCCATGTTATCAGCCAGACAGGAGGATACAGTGA

Translation (347 aa):
MDEQPRLMHSHAGVGMAGHPGLSQHLQDGAGGTEGEGGRKQDIGDILQQIMTITDQSLDEAQARKHALNC
HRMKPALFNVLCEIKEKTVLSIRGAQEEEPTDPQLMRLDNMLLAEGVAGPEKGGGSAAAAAAAAASGGAG
SDNSVEHSDYRAKLSQIRQIYHTELEKYEQACNEFTTHVMNLLREQSRTRPISPKEIERMVSIIHRKFSS
IQMQLKQSTCEAVMILRSRFLDARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQV
SNWFGNKRIRYKKNIGKFQEEANIYAAKTAVTATNVSAHGSQANSPSTPNSAGGYPSPCYQPDRRIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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