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Report for CCDS3452.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3452.1 Public Homo sapiens 4 RPL9 24 110 108 CCDS HistoryNCBI Gene:6133Re-query CCDS DB by CCDS ID:3452.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3452.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295955.14 ENSP00000346022.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295955.14Link to Ensembl Protein Viewer:ENSP00000346022.7Re-query CCDS DB by Nucleotide ID:ENST00000295955Re-query CCDS DB by Protein ID:ENSP00000346022
Original member Current member EBI ENST00000449470.6 ENSP00000400467.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000449470.6Link to Ensembl Protein Viewer:ENSP00000400467.2Re-query CCDS DB by Nucleotide ID:ENST00000449470Re-query CCDS DB by Protein ID:ENSP00000400467
Original member Current member EBI ENST00000645496.2 ENSP00000494697.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645496.2Link to Ensembl Protein Viewer:ENSP00000494697.1Re-query CCDS DB by Nucleotide ID:ENST00000645496Re-query CCDS DB by Protein ID:ENSP00000494697
Original member Current member NCBI NM_000661.5 NP_000652.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000661.5Link to Protein Sequence:NP_000652.2Re-query CCDS DB by Nucleotide ID:NM_000661Re-query CCDS DB by Protein ID:NP_000652Link to BLAST:NP_000652.2
Original member Current member NCBI NM_001024921.4 NP_001020092.1 Accepted alive Link to Nucleotide Sequence:NM_001024921.4Link to Protein Sequence:NP_001020092.1Re-query CCDS DB by Nucleotide ID:NM_001024921Re-query CCDS DB by Protein ID:NP_001020092Link to BLAST:NP_001020092.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000652.2 192 P32969 192 100% 0 0
NP_001020092.1 192 P32969 192 100% 0 0

Chromosomal Locations for CCDS 3452.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 39454543 39454649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39454864 39454944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39456406 39456538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39457586 39457681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39458194 39458309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39458394 39458439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGAAGACTATTCTCAGCAATCAGACTGTCGACATTCCAGAAAATGTCGACATTACTCTGAAGGGACGCA
CAGTTATCGTGAAGGGCCCCAGAGGAACCCTGCGGAGGGACTTCAATCACATCAATGTAGAACTCAGCCT
TCTTGGAAAGAAAAAAAAGAGGCTCCGGGTTGACAAATGGTGGGGTAACAGAAAGGAACTGGCTACCGTT
CGGACTATTTGTAGTCATGTACAGAACATGATCAAGGGTGTTACACTGGGCTTCCGTTACAAGATGAGGT
CTGTGTATGCTCACTTCCCCATCAACGTTGTTATCCAGGAGAATGGGTCTCTTGTTGAAATCCGAAATTT
CTTGGGTGAAAAATATATCCGCAGGGTTCGGATGAGACCAGGTGTTGCTTGTTCAGTATCTCAAGCCCAG
AAAGATGAATTAATCCTTGAAGGAAATGACATTGAGCTTGTTTCAAATTCAGCGGCTTTGATTCAGCAAG
CCACAACAGTTAAAAACAAGGATATCAGGAAATTTTTGGATGGTATCTATGTCTCTGAAAAAGGAACTGT
TCAGCAGGCTGATGAATAA

Translation (192 aa):
MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATV
RTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQ
KDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQADE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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