NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS72709.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72709.1 Public Homo sapiens 1 PRAMEF8 24 110 108 CCDS HistoryNCBI Gene:391002Re-query CCDS DB by CCDS ID:72709.1Re-query CCDS DB by GeneID:391002See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72709.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357367.7 ENSP00000349931.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357367.7Link to Ensembl Protein Viewer:ENSP00000349931.2Re-query CCDS DB by Nucleotide ID:ENST00000357367Re-query CCDS DB by Protein ID:ENSP00000349931
Original member Current member EBI ENST00000621519.5 ENSP00000484753.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000621519.5Link to Ensembl Protein Viewer:ENSP00000484753.1Re-query CCDS DB by Nucleotide ID:ENST00000621519Re-query CCDS DB by Protein ID:ENSP00000484753
Original member Current member NCBI NM_001012276.3 NP_001012276.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001012276.3Link to Protein Sequence:NP_001012276.2Re-query CCDS DB by Nucleotide ID:NM_001012276Re-query CCDS DB by Protein ID:NP_001012276Link to BLAST:NP_001012276.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012276.2 474 Q5VWM4 474 100% 0 0

Chromosomal Locations for CCDS 72709.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 13281371 13281932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13282847 13283422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13283805 13284091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGAGCATCAGGGCCCCACCCAGACTCCTGGAGCTGGCAAGGCAGAGGCTGCTGAGGGACCAGGCCTTGG
CCATCTCCACCATGGAGGAGCTGCCCAGGGAGCTCTTCCCCACACTGTTCATGGAGGCCTTCAGCAGGAG
ACGCTGTGAAACCCTGAAAACAATGGTGCAGGCCTGGCCTTTCACCCGCCTCCCTCTAGGGTCCCTGATG
AAGTCGCCTCATCTGGAGTCATTAAAATCTGTGCTGGAAGGGGTTGATGTGCTGTTGACCCAAGAGGTTC
GCCCCAGGCAGTCAAAACTTCAAGTGCTGGACTTGAGGAATGTGGATGAGAACTTCTGCGACATATTTTC
TGGAGCTACTGCATCCTTCCCGGAGGCTCTGAGTCAGAAGCAAACAGCAGATAACTGTCCAGGGACAGGC
AGGCAGCAGCCATTCATGGTGTTCATAGACCTTTGTCTCAAGAACAGGACACTAGATGAATGCCTCACCC
ACCTCTTAGAGTGGGGCAAGCAGAGAAAAGGCTTACTGCATGTGTGTTGCAAGGAGCTGCAGGTTTTTGG
AATGCCCATCCACAGTATCATAGAGGTCCTGAACATGGTGGAGCTTGACTGTATCCAGGAGGTGGAAGTG
TGCTGCCCCTGGGAGCTGTCCACTCTTGTGAAGTTTGCCCCTTACCTGGGCCAGATGAGGAATCTCCGCA
AACTTGTTCTCTTCAACATCCGTGCATCTGCCTGCATTCCCCCAGACAACAAGGGGCAGTTCATTGCCCG
ATTCACCTCTCAGTTCCTCAAGCTGGACTATTTCCAGAATCTGTCTATGCACTCCGTCTCTTTCCTCGAA
GGCCACCTGGACCAGCTGCTCAGGTGTCTCCAGGCCTCCTTGGAGATGGTCGTTATGACCGACTGCCTGC
TGTCAGAGTCGGACTTGAAGCATCTCTCTTGGTGCCCGAGCATCCGTCAATTAAAGGAGCTGGACCTGAG
GGGTGTCACGCTGACCCATTTCAGCCCTGAGCCCCTCACAGGTCTGCTGGAGCAAGTTGTGGCCACCCTG
CAGACCCTGGACTTAGAGGACTGTGGGATCATGGATTCCCAACTCAGCGCCATCCTGCCTGTCCTGAGCC
GCTGCTCCCAGCTCAGCACCTTCAGCTTCTGTGGGAACCTCATCTCCATGGCTGCCCTTGAGAACCTGCT
GCGCCACACCGTCGGGCTGAGCAAGCTAAGCCTGGAGCTGTATCCTGCCCCTCTGGAGAGTTATGACACC
CAGGGAGCTCTCTGCTGGGGGAGATTTGCTGAACTTGGGGCTGAGCTGATGAACACACTGAGGGACTTAA
GGCAGCCCAAGATCATTGTGTTCTGCACCGTCCCCTGCCCTCGCTGTGGCATCAGGGCCTCCTATGACCT
GGAGCCCAGTCACTGCCTCTGTTGA

Translation (474 aa):
MSIRAPPRLLELARQRLLRDQALAISTMEELPRELFPTLFMEAFSRRRCETLKTMVQAWPFTRLPLGSLM
KSPHLESLKSVLEGVDVLLTQEVRPRQSKLQVLDLRNVDENFCDIFSGATASFPEALSQKQTADNCPGTG
RQQPFMVFIDLCLKNRTLDECLTHLLEWGKQRKGLLHVCCKELQVFGMPIHSIIEVLNMVELDCIQEVEV
CCPWELSTLVKFAPYLGQMRNLRKLVLFNIRASACIPPDNKGQFIARFTSQFLKLDYFQNLSMHSVSFLE
GHLDQLLRCLQASLEMVVMTDCLLSESDLKHLSWCPSIRQLKELDLRGVTLTHFSPEPLTGLLEQVVATL
QTLDLEDCGIMDSQLSAILPVLSRCSQLSTFSFCGNLISMAALENLLRHTVGLSKLSLELYPAPLESYDT
QGALCWGRFAELGAELMNTLRDLRQPKIIVFCTVPCPRCGIRASYDLEPSHCLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH