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Report for CCDS78091.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78091.1 Public Homo sapiens 5 NOP16 24 110 108 CCDS HistoryNCBI Gene:51491Re-query CCDS DB by CCDS ID:78091.1Re-query CCDS DB by GeneID:51491See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 78091.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000618911.4 ENSP00000483001.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618911.4Link to Ensembl Protein Viewer:ENSP00000483001.1Re-query CCDS DB by Nucleotide ID:ENST00000618911Re-query CCDS DB by Protein ID:ENSP00000483001
Original member Current member NCBI NM_001256539.4 NP_001243468.2 Accepted alive Link to Nucleotide Sequence:NM_001256539.4Link to Protein Sequence:NP_001243468.2Re-query CCDS DB by Nucleotide ID:NM_001256539Re-query CCDS DB by Protein ID:NP_001243468Link to BLAST:NP_001243468.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243468.2 232 Q9Y3C1-3 232 100% 0 0

Chromosomal Locations for CCDS 78091.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 176383981 176384286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176385221 176385327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176386840 176386909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176388235 176388343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176388433 176388539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGCCCAAGGCCAAGGGCAAAACCCGGAGGCAGAAGTTTGGTTACAGTGTCAACCGAAAGCGTCTGAACC
GGAATGCTCGACGGAAGGCAGCGCCGCGGATCGAATGCTCCCACATCCGACATGCCTGGGACCACGCTAA
ATCGGTACGGCAGAACCTGGCCGAGATGGGGTTGGCTGTGGACCCCAACAGGGCGGTGCCCCTCCGTAAG
AGAAAGGTGAAGGCCATGGAGGTGGACATAGAGGAGAGGCCTAAAGAGCTTGTACGGAAGCCCTATGTGC
TGAATGACCTGGAGGCAGAAGCCAGCCTTCCAGAAAAGAAAGGAAATACTCTGTCTCGGGACCTCATTGA
CTATGTACGCTACATGGTAGAGAACCACGGGGAGGACTATAAGCAGAGTGGCAAGACTTCCTCGATTCTT
TGCAGAAGAGGAAGATGGAGGTGGAGTGACTGGTTTACATCACAGCTGCCCCAGGCTGAGGCGTCCCCCG
GACCAGTGAAGCTGGAGCCAGGGTGTAAGGCAAGGAGGTGCTGTGTGGCTCCAGAGGAGCTGGCCAGGTC
CCATGGAATCAGAAGGTTACACACACACGTGCACACTCCCCGCTCTGGGGAAGGAACTGTTCTCAGAGGC
TCCAATTTATATTCATCTGGGGGTTCACGGAAAAGCCAGAACCTGCTGTTTTCAGGGTGGGTGATGTAA

Translation (232 aa):
MPKAKGKTRRQKFGYSVNRKRLNRNARRKAAPRIECSHIRHAWDHAKSVRQNLAEMGLAVDPNRAVPLRK
RKVKAMEVDIEERPKELVRKPYVLNDLEAEASLPEKKGNTLSRDLIDYVRYMVENHGEDYKQSGKTSSIL
CRRGRWRWSDWFTSQLPQAEASPGPVKLEPGCKARRCCVAPEELARSHGIRRLHTHVHTPRSGEGTVLRG
SNLYSSGGSRKSQNLLFSGWVM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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