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Report for CCDS41000.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41000.1 Public Mus musculus X Vma21 23 108 98 CCDS HistoryNCBI Gene:67048Re-query CCDS DB by CCDS ID:41000.1Re-query CCDS DB by GeneID:67048See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41000.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114576.8 ENSMUSP00000110223.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114576.8Link to Ensembl Protein Viewer:ENSMUSP00000110223.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114576Re-query CCDS DB by Protein ID:ENSMUSP00000110223
Original member Current member NCBI NM_001081356.3 NP_001074825.1 Accepted alive Link to Nucleotide Sequence:NM_001081356.3Link to Protein Sequence:NP_001074825.1Re-query CCDS DB by Nucleotide ID:NM_001081356Re-query CCDS DB by Protein ID:NP_001074825Link to BLAST:NP_001074825.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074825.1 101 Q78T54-1 101 100% 0 0

Chromosomal Locations for CCDS 41000.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 71816888 71816940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71820068 71820177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 71820805 71820947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (306 nt):
ATGGAGCGTCTTGATAAAGCAGCGCTCAATGCGCTGCAGCCTCCAGAGTTCAGAAATGAAAACTCTTTAG
CTGCAACCCTGAAGACACTGCTGTTCTTCACAGCTTTAATGATCACGGTTCCTATCGGCTTGTATTTTAC
AACGAAAGCTTATATATTTGAAGGTGCCCTTGGAATGTCTAATAGAGACAGCTATTTTTATGCCGCAATT
GTTGCTGTTGTTGCTGTTCATGTGGTTCTGGCCCTGTTTGTCTATGTGGCCTGGAATGAAGGCTCACGAC
AGTGGCGTGAAGGCAAACAGGATTAA

Translation (101 aa):
MERLDKAALNALQPPEFRNENSLAATLKTLLFFTALMITVPIGLYFTTKAYIFEGALGMSNRDSYFYAAI
VAVVAVHVVLALFVYVAWNEGSRQWREGKQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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