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Report for CCDS71087.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71087.1 Public Mus musculus 2 Tmx2 23 108 98 CCDS HistoryNCBI Gene:66958Re-query CCDS DB by CCDS ID:71087.1Re-query CCDS DB by GeneID:66958See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71087.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111664.7 ENSMUSP00000107293.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111664.7Link to Ensembl Protein Viewer:ENSMUSP00000107293.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111664Re-query CCDS DB by Protein ID:ENSMUSP00000107293
Original member Current member NCBI NM_001290751.1 NP_001277680.1 Accepted alive Link to Nucleotide Sequence:NM_001290751.1Link to Protein Sequence:NP_001277680.1Re-query CCDS DB by Nucleotide ID:NM_001290751Re-query CCDS DB by Protein ID:NP_001277680Link to BLAST:NP_001277680.1

Chromosomal Locations for CCDS 71087.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 84672389 84672532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84673024 84673153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84673254 84673319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84673500 84673606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84675405 84675481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84676097 84676157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84677851 84678039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGCTGTCCTTGCGCCTCTGATTGCTTTGGTGTACTCGGTGCCGCGGCTTTCTCGATGGCTGGCCCGAC
CTTATTGCCTTCTGTCTGCTCTGCTTTCCATTGCTTTCCTCCTCGTGAGGAAACTGCCACCGATTTGCAA
TGGTCTCCCCACGCAACGCGAAGATGGCAACCCGTGTGACTTTGACTGGAGAGAAGTGGAGATCCTGATG
TTCCTCAGTGCCATTGTGATGATGAAGAACCGCAGATCCATGTTCCTGATGACCTGCAAGCCCCCGCTGT
ACATGGGTCCTGAGTATATCAAGTACTTCAATGATAAAACCATTGATGAGGAGCTGGAGCGAGACAAGAG
GGTCACTTGGATTGTGGAGTTCTTTGCCAACTGGTCTAATGATTGCCAATCCTTTGCTCCCATCTATGCG
GACTTGTCCCTCAAGTACAACTGTTCAGGGCTAAATTTTGGGAAGGTAGATGTTGGACGCTACACTGACG
TTAGCACACGGTACAAAGTGAGCACATCACCCCTCACCAGACAGCTCCCTACCCTGATTCTGTTCCAAGG
CGGCAAGGAGGTCATTCGTCGGCCGCAGATTGACAAGAAAGGACGAGCTGTCTCTTGGACCTTTTCTGAG
GAGAATGTGATTCGAGAATTCAACTTGAATGAGCTATACCAACGAGCCAAGAAGCACTCAAAGGGTGGAG
ACATGTCAGAAGAGAAGCCTGTGGACCCTGCTCCCACTACTGTGCCAGATGGGGAAAACAAGAAGGACAA
ATAG

Translation (257 aa):
MAVLAPLIALVYSVPRLSRWLARPYCLLSALLSIAFLLVRKLPPICNGLPTQREDGNPCDFDWREVEILM
FLSAIVMMKNRRSMFLMTCKPPLYMGPEYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYA
DLSLKYNCSGLNFGKVDVGRYTDVSTRYKVSTSPLTRQLPTLILFQGGKEVIRRPQIDKKGRAVSWTFSE
ENVIREFNLNELYQRAKKHSKGGDMSEEKPVDPAPTTVPDGENKKDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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