NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS81433.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81433.1 Public Homo sapiens 1 BECN2 24 110 108 CCDS HistoryNCBI Gene:441925Re-query CCDS DB by CCDS ID:81433.1Re-query CCDS DB by GeneID:441925See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81433.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000419583.2 ENSP00000488361.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000419583.2Link to Ensembl Protein Viewer:ENSP00000488361.1Re-query CCDS DB by Nucleotide ID:ENST00000419583Re-query CCDS DB by Protein ID:ENSP00000488361
Original member Current member NCBI NM_001290693.1 NP_001277622.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001290693.1Link to Protein Sequence:NP_001277622.1Re-query CCDS DB by Nucleotide ID:NM_001290693Re-query CCDS DB by Protein ID:NP_001277622Link to BLAST:NP_001277622.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277622.1 431 A8MW95 431 100% 0 0

Chromosomal Locations for CCDS 81433.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 241957767 241959062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGTCTTCCATCCGCTTCCTGTGCCAGCGCTGCCACCAGGCCCTGAAGCTGAGCGGCTCCTCGGAGTCTA
GGAGCCTCCCTGCAGCCCCGGCGCCCACCTCTGGGCAGGCTGAGCCCGGAGACACCCGGGAGCCCGGCGT
CACCACCAGGGAGGTGACAGACGCTGAGGAGCAACAGGACGGTGCCTCTAGCAGATCCCCTCCAGGCGAT
GGCAGTGTGTCCAAGGGCCATGCCAACATCTTCACCCTGCTGGGGGAGCTTGGCGCCATGCACATGCTCA
GTAGCATCCAGAAGGCAGCTGGTGACATTTTTGACATAGTCTCTGGCCAAGCAGTTGTGGACCATCCCCT
GTGTGAAGAATGCACCGACAGTCTTTTAGAGCAGCTGGACATCCAGCTCGCTCTCACAGAAGCTGACAGT
CAGAACTACCAACGCTGCCTGGAGACCGGGGAGCTGGCGACCAGCGAGGACGAGGCGGCGGCGCTGCGGG
CGGAGCTGCGGGACCTGGAGCTGGAGGAGGCCAGGCTGGTGCAGGAGCTGGAGGATGTGGACAGGAACAA
TGCAAGAGCAGCGGCGGATCTCCAGGCAGCCCAGGCAGAGGCTGCGGAGCTGGACCAGCAGGAGAGGCAG
CACTACAGGGACTACAGTGCCTTGAAGCGGCAGCAGCTGGAACTGCTTGATCAGCTGGGGAACGTGGAGA
ACCAGCTGCAGTATGCCAGGGTCCAGAGGGACCGGCTGAAGGAAATCAACTGTTTCACCGCCACGTTTGA
GATCTGGGTGGAGGGCCCCTTGGGCGTCATCAATAACTTCAGGTTGGGCCGCCTCCCCACTGTCCGTGTG
GGCTGGAATGAGATTAACACTGCCTGGGGACAGGCGGCCTTGCTGCTCCTTACCCTGGCCAATACAATTG
GACTGCAGTTTCAGAGGTATCGACTCATCCCCTGCGGAAACCATTCGTATCTGAAGTCTTTAACAGATGA
CCGCACTGAGCTGCCGTTGTTCTGTTATGGGGGGCAGGATGTTTTCCTCAATAACAAGTATGACCGCGCG
ATGGTGGCCTTCCTGGACTGCATGCAGCAGTTCAAGGAAGAGGCTGAGAAGGGTGAGCTGGGCCTCTCTC
TGCCCTACGGGATCCAGGTGGAGACAGGCCTGATGGAGGACGTTGGCGGCCGAGGGGAATGCTATTCCAT
CAGAACCCATCTGAACACGCAGGAGCTGTGGACAAAGGCACTCAAGTTCATGCTTATAAATTTCAAGTGG
AGTCTCATCTGGGTTGCCTCAAGGTATCAAAAGTAG

Translation (431 aa):
MSSIRFLCQRCHQALKLSGSSESRSLPAAPAPTSGQAEPGDTREPGVTTREVTDAEEQQDGASSRSPPGD
GSVSKGHANIFTLLGELGAMHMLSSIQKAAGDIFDIVSGQAVVDHPLCEECTDSLLEQLDIQLALTEADS
QNYQRCLETGELATSEDEAAALRAELRDLELEEARLVQELEDVDRNNARAAADLQAAQAEAAELDQQERQ
HYRDYSALKRQQLELLDQLGNVENQLQYARVQRDRLKEINCFTATFEIWVEGPLGVINNFRLGRLPTVRV
GWNEINTAWGQAALLLLTLANTIGLQFQRYRLIPCGNHSYLKSLTDDRTELPLFCYGGQDVFLNNKYDRA
MVAFLDCMQQFKEEAEKGELGLSLPYGIQVETGLMEDVGGRGECYSIRTHLNTQELWTKALKFMLINFKW
SLIWVASRYQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH